Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400077217 | Potato | nucleus | 90.55 | 60.37 |
| Solyc09g005030.1.1 | Tomato | nucleus | 31.5 | 54.79 |
| Os11t0106100-00 | Rice | nucleus | 26.38 | 31.46 |
| Solyc10g076460.1.1 | Tomato | nucleus | 35.83 | 30.13 |
| GSMUA_Achr7P22410_001 | Banana | nucleus | 37.01 | 28.31 |
| VIT_13s0067g01500.t01 | Wine grape | extracellular, vacuole | 48.03 | 26.01 |
| Solyc12g006280.1.1 | Tomato | nucleus | 17.32 | 25.29 |
| TraesCS5D01G158300.1 | Wheat | nucleus | 29.53 | 23.15 |
| TraesCS5A01G153000.1 | Wheat | nucleus | 29.53 | 23.01 |
| Solyc02g080860.1.1 | Tomato | nucleus | 22.83 | 22.92 |
| Solyc03g006150.2.1 | Tomato | extracellular, nucleus | 27.56 | 22.8 |
| Solyc02g080730.1.1 | Tomato | nucleus | 24.02 | 22.59 |
| Solyc02g080740.1.1 | Tomato | nucleus | 24.41 | 22.38 |
| TraesCS5B01G151800.1 | Wheat | nucleus | 29.53 | 22.26 |
| TraesCS4D01G131500.1 | Wheat | nucleus | 29.13 | 21.7 |
| TraesCS4A01G180900.1 | Wheat | nucleus | 28.74 | 21.41 |
| Os12t0105600-01 | Rice | nucleus | 25.98 | 21.02 |
| Solyc02g076670.2.1 | Tomato | nucleus | 27.56 | 20.71 |
| Zm00001d005087_P001 | Maize | nucleus | 28.35 | 20.69 |
| EES09087 | Sorghum | nucleus | 29.53 | 20.66 |
| EES15503 | Sorghum | nucleus | 29.53 | 20.49 |
| TraesCS4B01G136900.1 | Wheat | nucleus | 27.17 | 20.35 |
| Solyc02g080720.1.1 | Tomato | nucleus | 24.41 | 19.02 |
| Solyc08g076400.2.1 | Tomato | nucleus | 18.9 | 18.25 |
| Solyc04g008480.1.1 | Tomato | nucleus | 21.26 | 18.18 |
| Solyc06g066340.2.1 | Tomato | nucleus | 20.47 | 17.87 |
| Solyc02g080710.1.1 | Tomato | nucleus | 25.2 | 17.83 |
| Solyc05g051060.2.1 | Tomato | nucleus | 19.29 | 17.25 |
| Solyc04g079600.2.1 | Tomato | nucleus | 19.29 | 15.91 |
| Solyc08g005260.1.1 | Tomato | nucleus | 20.87 | 14.68 |
| Solyc02g080680.1.1 | Tomato | mitochondrion | 12.2 | 13.54 |
| Solyc11g011770.1.1 | Tomato | nucleus | 20.87 | 11.47 |
| Solyc07g045000.2.1 | Tomato | nucleus | 6.69 | 9.66 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | UniProt:K4C5P9 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 | InterPro:SANT/Myb | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc06g051060.2 | EnsemblPlants:Solyc06g051060.2.1 |
| TIGRFAMs:TIGR01557 | UniParc:UPI0002766D09 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6:+:34167420..34169091
Molecular Weight (calculated)
28897.5 Da
IEP (calculated)
9.808
GRAVY (calculated)
-1.003
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGSSSTEE DSKSNPKQQI EFEEEEDVET EVNSKAQGTT RSSSSNSTVE ENGKKPNSAS VRQYVRSKTP RLRWTPELHL RFVHAVERLG GQDRATPKLV
101: LQFMNIKGLS IAHVKSHLQM YRSKKTDDPN QISTDGRFLL ENGDHHIFNL TQLSRLHGFK QTSSSSLRYD TALWNRQANS LYNPYNMNIG GGSSISTRHG
201: FASHSSHEQL FPWNKSIEIE KNQNRHNQRF WPPITQIGTS SEIIRARNDD TNPC
101: LQFMNIKGLS IAHVKSHLQM YRSKKTDDPN QISTDGRFLL ENGDHHIFNL TQLSRLHGFK QTSSSSLRYD TALWNRQANS LYNPYNMNIG GGSSISTRHG
201: FASHSSHEQL FPWNKSIEIE KNQNRHNQRF WPPITQIGTS SEIIRARNDD TNPC
001: MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIZ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.