Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400026419 | Potato | nucleus | 94.67 | 91.95 |
| Solyc03g006150.2.1 | Tomato | extracellular, nucleus | 50.59 | 55.7 |
| Solyc09g005030.1.1 | Tomato | nucleus | 18.34 | 42.47 |
| VIT_12s0028g02080.t01 | Wine grape | nucleus | 27.22 | 38.02 |
| AT2G42660.1 | Thale cress | nucleus | 24.85 | 32.94 |
| KRH11029 | Soybean | nucleus | 35.21 | 32.6 |
| KRH21258 | Soybean | nucleus | 34.62 | 31.37 |
| KRH58975 | Soybean | nucleus | 33.73 | 28.43 |
| KRH42874 | Soybean | nucleus | 33.43 | 28.11 |
| Solyc06g051060.2.1 | Tomato | nucleus | 20.71 | 27.56 |
| CDY42825 | Canola | nucleus | 25.15 | 25.99 |
| Solyc10g076460.1.1 | Tomato | nucleus | 22.78 | 25.5 |
| CDY67147 | Canola | nucleus | 24.56 | 25.38 |
| Solyc02g080860.1.1 | Tomato | nucleus | 18.93 | 25.3 |
| Solyc12g006280.1.1 | Tomato | nucleus | 13.02 | 25.29 |
| KRH27060 | Soybean | nucleus | 26.92 | 24.73 |
| KRH22274 | Soybean | nucleus | 26.04 | 23.85 |
| Solyc02g080730.1.1 | Tomato | nucleus | 18.64 | 23.33 |
| Solyc04g008480.1.1 | Tomato | nucleus | 20.12 | 22.9 |
| GSMUA_Achr7P13880_001 | Banana | nucleus | 26.92 | 22.2 |
| Solyc02g080740.1.1 | Tomato | nucleus | 18.05 | 22.02 |
| GSMUA_Achr7P09370_001 | Banana | nucleus | 24.56 | 21.96 |
| GSMUA_Achr10P... | Banana | nucleus | 31.66 | 20.66 |
| HORVU6Hr1G019650.5 | Barley | nucleus | 27.81 | 19.58 |
| TraesCS6D01G098200.1 | Wheat | nucleus | 27.51 | 19.58 |
| Solyc02g080720.1.1 | Tomato | nucleus | 18.64 | 19.33 |
| TraesCS6A01G109700.1 | Wheat | nucleus | 27.22 | 19.29 |
| OQU76531 | Sorghum | nucleus | 28.7 | 18.95 |
| Zm00001d046174_P001 | Maize | nucleus | 29.59 | 18.83 |
| Bra000270.1-P | Field mustard | nucleus | 15.98 | 18.75 |
| Solyc02g080710.1.1 | Tomato | nucleus | 19.82 | 18.66 |
| EES04827 | Sorghum | nucleus | 29.29 | 18.64 |
| Solyc08g076400.2.1 | Tomato | nucleus | 14.5 | 18.63 |
| Os06t0543200-01 | Rice | nucleus | 29.88 | 18.6 |
| Zm00001d037015_P001 | Maize | nucleus | 30.18 | 18.41 |
| TraesCS6B01G138200.1 | Wheat | nucleus | 28.11 | 17.99 |
| Zm00001d016175_P001 | Maize | nucleus | 28.7 | 17.96 |
| Solyc06g066340.2.1 | Tomato | nucleus | 15.38 | 17.87 |
| Solyc04g079600.2.1 | Tomato | nucleus | 16.27 | 17.86 |
| HORVU7Hr1G080530.3 | Barley | nucleus | 26.63 | 17.61 |
| TraesCS7A01G345200.2 | Wheat | nucleus | 26.92 | 17.6 |
| TraesCS7D01G334100.1 | Wheat | nucleus | 26.92 | 17.6 |
| TraesCS7B01G238000.1 | Wheat | nucleus | 26.92 | 17.37 |
| Solyc05g051060.2.1 | Tomato | nucleus | 14.5 | 17.25 |
| Os02t0241200-00 | Rice | nucleus | 26.33 | 16.33 |
| Solyc02g080680.1.1 | Tomato | mitochondrion | 10.95 | 16.16 |
| Solyc08g005260.1.1 | Tomato | nucleus | 16.86 | 15.79 |
| Solyc07g045000.2.1 | Tomato | nucleus | 7.4 | 14.2 |
| Solyc11g011770.1.1 | Tomato | nucleus | 16.86 | 12.34 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | UniProt:K4B8P4 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31314 | PANTHER:PTHR31314:SF43 | InterPro:SANT/Myb | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc02g076670.2 | EnsemblPlants:Solyc02g076670.2.1 |
| TIGRFAMs:TIGR01557 | UniParc:UPI0002767774 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2:+:41820361..41822559
Molecular Weight (calculated)
39368.5 Da
IEP (calculated)
9.799
GRAVY (calculated)
-0.949
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MENASSSSIN LNEDNKGKLE EEEEVIEVED SNEKEIEGNY NTSSDVEKKN VRQYVRSKLP RLRWTPDLHR SFVHAIERLG GQERATPKLV LQMMNVRGLS
101: IAHVKSHLQM YRSKKLDESG QVLGHGNNRS IMQGRSYFFR SHLGGQRYNP IQDFKMKNGA IVLARNFNYD NHALKSHSFS RPSYQAKNIF SRYLSWSSDN
201: QGGLVNSKFQ KGEDLLRVKS WQTPRQVVIE QNGVMPIRST QFLEQKKFIP NQWEEKTAKN SHFLLQQNLG QPFSKWNCRN NALDQNLVTP CRIEMKEDKN
301: GFEEKEWLPD LQLRLSRSSD DKNEKRMDQS DINTMLSL
101: IAHVKSHLQM YRSKKLDESG QVLGHGNNRS IMQGRSYFFR SHLGGQRYNP IQDFKMKNGA IVLARNFNYD NHALKSHSFS RPSYQAKNIF SRYLSWSSDN
201: QGGLVNSKFQ KGEDLLRVKS WQTPRQVVIE QNGVMPIRST QFLEQKKFIP NQWEEKTAKN SHFLLQQNLG QPFSKWNCRN NALDQNLVTP CRIEMKEDKN
301: GFEEKEWLPD LQLRLSRSSD DKNEKRMDQS DINTMLSL
001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.