Factsheet for Solyc02g080740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g080730.1.1	Tomato	nucleus	69.68	71.48
Solyc02g080720.1.1	Tomato	nucleus	81.59	69.33
Solyc02g080680.1.1	Tomato	mitochondrion	53.79	65.07
Bra018498.1-P	Field mustard	mitochondrion	15.16	59.15
CDY71094	Canola	mitochondrion	16.25	56.25
Solyc02g080710.1.1	Tomato	nucleus	70.04	54.04
PGSC0003DMT400042480	Potato	nucleus	35.74	48.29
VIT_00s1624g00010.t01	Wine grape	nucleus	20.58	46.34
AT4G04555.1	Thale cress	mitochondrion	14.8	38.68
Solyc02g080860.1.1	Tomato	nucleus	34.3	37.55
Solyc09g005030.1.1	Tomato	nucleus	18.41	34.93
CDY00733	Canola	mitochondrion, nucleus	16.97	33.1
PGSC0003DMT400042402	Potato	nucleus	19.86	31.43
CDX94559	Canola	mitochondrion	16.61	26.59
Bra029503.1-P	Field mustard	mitochondrion	16.25	26.16
CDY16660	Canola	mitochondrion	16.25	26.01
Solyc12g006280.1.1	Tomato	nucleus	16.25	25.86
KRG99004	Soybean	nucleus	18.77	25.0
Solyc06g051060.2.1	Tomato	nucleus	22.38	24.41
AT4G04580.1	Thale cress	nucleus	14.08	23.49
CDX97319	Canola	mitochondrion	16.97	22.71
AT4G04605.1	Thale cress	mitochondrion	17.33	21.82
Solyc10g076460.1.1	Tomato	nucleus	21.66	19.87
KRH36473	Soybean	nucleus	20.22	19.79
KRH11454	Soybean	nucleus	19.86	19.16
Solyc02g076670.2.1	Tomato	nucleus	22.02	18.05
Solyc04g008480.1.1	Tomato	nucleus	19.13	17.85
Solyc03g006150.2.1	Tomato	extracellular, nucleus	18.77	16.94
Solyc08g076400.2.1	Tomato	nucleus	15.52	16.35
Solyc06g066340.2.1	Tomato	nucleus	15.88	15.12
Solyc05g051060.2.1	Tomato	nucleus	15.16	14.79
Solyc08g005260.1.1	Tomato	nucleus	18.05	13.85
Solyc04g079600.2.1	Tomato	nucleus	14.08	12.66
Solyc07g045000.2.1	Tomato	nucleus	7.22	11.36
Solyc11g011770.1.1	Tomato	nucleus	16.97	10.17
KRH45989	Soybean	nucleus	5.05	8.7
Os12t0591600-01	Rice	nucleus	1.44	2.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0044212	InterPro:Homeobox-like_sf	UniProt:K4B9U5	InterPro:Myb_dom_plants	PANTHER:PTHR31496
PANTHER:PTHR31496:SF10	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc02g080740.1	EnsemblPlants:Solyc02g080740.1.1	TIGRFAMs:TIGR01557	TMHMM:TMhelix
UniParc:UPI0002769205	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:44887506..44889091

Molecular Weight (calculated)

31987.4 Da

IEP (calculated)

10.262

GRAVY (calculated)

-0.529

Length

277 amino acids

Sequence
(BLAST)

001: MMKGLEFSEN SPSLSMELEY RSNDKSSEFA IRTYVKSTMP RLRWTHDLHC RFVYVVERLG GVDRATPKRV LQIMDVKGLT ISHIKSHLQM YKNMKHQEMQ
101: AEAANGKKRN RIDGSDSMNI PQRNLVRRHN HIKGKAAMFD GSDRMNFPQR NLVHRYNHIK SKAAMFDGSD QMNFSQGNLV HCYNHNNGKA PIFNGSDEMN
201: FPQGNLVHRY NHNNGKSVFD GYLNPTVTTN YLDKIPSSST AFPPPWFVSF FFSFFFLLKM GTILSVNTFY IINVVIT

Best Arabidopsis Sequence Match ( AT4G04580.1 )
(BLAST)

001: MQDPMVRSYI RSDNPRMHWT DDLDIRFIQV IEKLGGEESA TPKRILSLMG VRDLTISHVK SHLQMYRNKK KEESSKEIKM MREMTQRQSQ QYLQIYERAT
101: QFIQNQQRLQ LDNTEKITPV LGSSNKSLDQ SSKVGLNENR GNDVVVVGGA TGEEELSLEL TLGRKY

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9XEB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.