Factsheet for Solyc08g005260.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047532	Potato	nucleus	95.29	95.29
Solyc06g066340.2.1	Tomato	nucleus	50.14	62.2
Solyc08g076400.2.1	Tomato	nucleus	41.27	56.65
Solyc05g051060.2.1	Tomato	nucleus	31.02	39.44
GSMUA_Achr4P04510_001	Banana	nucleus	34.07	32.8
Solyc09g005030.1.1	Tomato	nucleus	12.74	31.51
Solyc04g079600.2.1	Tomato	nucleus	26.87	31.49
Solyc11g011770.1.1	Tomato	nucleus	39.89	31.17
VIT_04s0043g00340.t01	Wine grape	nucleus	39.61	30.62
Solyc02g080860.1.1	Tomato	nucleus	16.62	23.72
Solyc12g006280.1.1	Tomato	nucleus	11.08	22.99
Solyc06g051060.2.1	Tomato	nucleus	14.68	20.87
Solyc03g006150.2.1	Tomato	extracellular, nucleus	15.51	18.24
Solyc10g076460.1.1	Tomato	nucleus	15.24	18.21
Solyc02g080740.1.1	Tomato	nucleus	13.85	18.05
Solyc04g008480.1.1	Tomato	nucleus	14.4	17.51
Solyc02g080730.1.1	Tomato	nucleus	13.02	17.41
Solyc02g080720.1.1	Tomato	nucleus	15.51	17.18
Solyc02g076670.2.1	Tomato	nucleus	15.79	16.86
Solyc02g080710.1.1	Tomato	nucleus	16.62	16.71
Solyc07g045000.2.1	Tomato	nucleus	5.54	11.36
Solyc02g080680.1.1	Tomato	mitochondrion	6.65	10.48

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0044212
InterPro:Homeobox-like_sf	UniProt:K4CI17	InterPro:Myb_dom_plants	PFAM:PF00249	PANTHER:PTHR31496	PANTHER:PTHR31496:SF10
InterPro:SANT/Myb	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc08g005260.1	EnsemblPlants:Solyc08g005260.1.1	TIGRFAMs:TIGR01557	UniParc:UPI000276B850
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:174641..179270

Molecular Weight (calculated)

40650.2 Da

IEP (calculated)

7.852

GRAVY (calculated)

-0.780

Length

361 amino acids

Sequence
(BLAST)

001: MELFPPQPDL SLQISPPNTT TNQEENNIDL SFWERALESR KPHNININNT CCFDLSLSSN IPRPSSILNH QDPKYPSSQY FQNNTNFINN PFIPHHHHNL
101: GLFSPISGVP LYNNHQNSST NNTLPIQSSP TSFNNYNNIN PISSSNSHFH QSHNHQNGLM RSRFFSRFPT KRSMRAPRMR WTSTLHARFV HAVELLGGHE
201: RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKTTDKSAVG AASSGQSEVF DNVSSGDNSD DLLLEIKNSN KSELSVQQGR QNMYNQEKDY GGLWSNSSRE
301: SWHMHGKLGD YPGNLPSLEK NMEAKCTSYE GISTEVSSSS ITQASPKKPN LEFTLGIPNI S

Best Arabidopsis Sequence Match ( AT1G32240.1 )
(BLAST)

001: MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI
101: LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR
201: FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD
301: MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEKEL DGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH

Arabidopsis Description

KAN2Probable transcription factor KAN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C616]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.