Factsheet for Solyc06g066340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009890.1.1
Solyc01g009900.2.1
Solyc01g009910.1.1
Solyc01g110190.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g115070.1.1
Solyc03g118540.2.1
Solyc03g119390.2.1
Solyc05g015910.1.1
Solyc06g068930.1.1
Solyc06g072990.1.1
Solyc06g074530.1.1
Solyc09g082950.1.1
Solyc10g006350.2.1
Solyc10g006920.2.1
Solyc10g054080.1.1
Solyc11g044880.1.1
Solyc11g066890.1.1
Solyc12g036470.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16560.1	Solyc09g082950.1.1	AT1G07310.1	21798944
AT5G16560.1	Solyc03g119390.2.1	AT1G18400.1	21798944
AT5G16560.1	Solyc12g036470.1.1	AT1G18400.1	21798944
AT5G16560.1	Solyc03g118540.2.1	AT3G17860.1	21798944
AT5G16560.1	Solyc06g068930.1.1	AT3G17860.1	21798944
AT5G16560.1	Solyc06g074530.1.1	AT3G44720.1	21798944
AT5G16560.1	Solyc11g066890.1.1	AT3G44720.1	21798944
AT5G16560.1	Solyc10g006350.2.1	AT4G27060.1	21798944
AT5G16560.1	Solyc10g006920.2.1	AT4G27460.1	21798944
AT5G16560.1	Solyc01g110190.2.1	AT4G39050.1	21798944
AT5G16560.1	Solyc10g054080.1.1	AT4G39050.1	21798944
AT5G16560.1	Solyc11g044880.1.1	AT4G39050.1	21798944
AT5G16560.1	Solyc01g009890.1.1	AT5G14070.1	21798944
AT5G16560.1	Solyc01g009900.2.1	AT5G14070.1	21798944
AT5G16560.1	Solyc01g009910.1.1	AT5G14070.1	21798944
AT5G16560.1	Solyc05g015910.1.1	AT5G14070.1	21798944
AT5G16560.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT5G16560.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT5G16560.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT5G16560.1	Solyc06g072990.1.1	AT5G24660.1	21798944
AT5G16560.1	Solyc03g115070.1.1	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043200	Potato	nucleus	95.88	70.1
Solyc08g005260.1.1	Tomato	nucleus	62.2	50.14
Solyc08g076400.2.1	Tomato	nucleus	40.89	45.25
Solyc05g051060.2.1	Tomato	nucleus	39.18	40.14
Bra008613.1-P	Field mustard	nucleus	31.62	31.62
CDX69443	Canola	nucleus	41.92	31.04
CDY67252	Canola	nucleus	41.92	30.96
CDX78699	Canola	nucleus	40.55	30.57
CDY28659	Canola	nucleus	31.96	30.49
CDX70701	Canola	nucleus	40.21	30.39
CDX85500	Canola	nucleus	40.89	29.82
CDY38105	Canola	nucleus	40.55	29.65
Solyc09g005030.1.1	Tomato	nucleus	14.78	29.45
AT5G16560.1	Thale cress	nucleus	40.55	29.28
KRH39002	Soybean	nucleus	38.49	27.18
Solyc11g011770.1.1	Tomato	nucleus	42.96	27.06
KRH48713	Soybean	nucleus	38.49	26.92
Bra023570.1-P	Field mustard	cytosol	36.43	26.63
Solyc04g079600.2.1	Tomato	nucleus	27.84	26.3
KXG25180	Sorghum	nucleus	38.49	23.58
Os08t0426866-00	Rice	nucleus	36.77	22.86
Solyc12g006280.1.1	Tomato	nucleus	13.06	21.84
Solyc02g080860.1.1	Tomato	nucleus	18.9	21.74
Zm00001d032249_P002	Maize	plastid	34.71	20.95
Solyc06g051060.2.1	Tomato	nucleus	17.87	20.47
Solyc10g076460.1.1	Tomato	nucleus	17.87	17.22
Solyc02g080730.1.1	Tomato	nucleus	15.46	16.67
Solyc04g008480.1.1	Tomato	nucleus	16.84	16.5
Solyc03g006150.2.1	Tomato	extracellular, nucleus	17.18	16.29
Solyc02g080740.1.1	Tomato	nucleus	15.12	15.88
Solyc02g076670.2.1	Tomato	nucleus	17.87	15.38
Solyc02g080720.1.1	Tomato	nucleus	17.18	15.34
Solyc02g080710.1.1	Tomato	nucleus	18.21	14.76
Bra006360.1-P	Field mustard	nucleus	28.18	11.19
Solyc07g045000.2.1	Tomato	nucleus	6.53	10.8
Solyc02g080680.1.1	Tomato	mitochondrion	7.22	9.17

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009943	GO:GO:0009944	GO:GO:0009956
GO:GO:0009987	GO:GO:0010051	GO:GO:0010158	GO:GO:0030154	GO:GO:0044212	GO:GO:0048440
GO:GO:0048481	GO:GO:1905392	InterPro:Homeobox-like_sf	UniProt:K4C7R0	InterPro:Myb_dom_plants	PFAM:PF00249
PANTHER:PTHR31496	PANTHER:PTHR31496:SF10	InterPro:SANT/Myb	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc06g066340.2	EnsemblPlants:Solyc06g066340.2.1
TIGRFAMs:TIGR01557	UniParc:UPI0002765D96	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:41628539..41634118

Molecular Weight (calculated)

32610.4 Da

IEP (calculated)

9.311

GRAVY (calculated)

-0.748

Length

291 amino acids

Sequence
(BLAST)

001: MRPIRGIPLY NQNPLPLPLP LSHHHNNYPI FAHQTFENTA PTTTPTLPIH SSGYCISSFS NNSNKTIPNS SPTTIPFHHS NHQGGLMRSR FLSRFPKRTM
101: RAPRMRWTSS LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTVKTT DRAAVPASSG QSEVFDNGSS GETSEDLMPD MENSKKPDLS
201: DQQGKNSMHL QEIDYHGLWS NSSSRESWQL HGKHGDYPGN IPSLEKTVKN QHIDLEAKCL SYDRLSGEVS SSSITETSPK KPNLEFTLGR P

Best Arabidopsis Sequence Match ( AT1G32240.1 )
(BLAST)

001: MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI
101: LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR
201: FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD
301: MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEKEL DGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH

Arabidopsis Description

KAN2Probable transcription factor KAN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C616]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.