Factsheet for Solyc02g080720.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g080740.1.1	Tomato	nucleus	69.33	81.59
PGSC0003DMT400042480	Potato	nucleus	48.47	77.07
Solyc02g080710.1.1	Tomato	nucleus	76.07	69.08
Solyc02g080730.1.1	Tomato	nucleus	56.44	68.15
Solyc02g080680.1.1	Tomato	mitochondrion	45.71	65.07
Bra018498.1-P	Field mustard	mitochondrion	12.58	57.75
CDY71094	Canola	mitochondrion	13.8	56.25
PGSC0003DMT400042402	Potato	nucleus	28.22	52.57
Solyc02g080860.1.1	Tomato	nucleus	38.96	50.2
VIT_00s1624g00010.t01	Wine grape	nucleus	17.48	46.34
AT4G04555.1	Thale cress	mitochondrion	11.66	35.85
Solyc09g005030.1.1	Tomato	nucleus	15.03	33.56
CDY00733	Canola	mitochondrion, nucleus	14.11	32.39
CDX94559	Canola	mitochondrion	15.64	29.48
Bra029503.1-P	Field mustard	mitochondrion	15.34	29.07
CDY16660	Canola	mitochondrion	15.34	28.9
Solyc12g006280.1.1	Tomato	nucleus	15.03	28.16
KRG99004	Soybean	nucleus	17.79	27.88
CDX97319	Canola	mitochondrion	16.56	26.09
AT4G04605.1	Thale cress	mitochondrion	16.56	24.55
Solyc06g051060.2.1	Tomato	nucleus	19.02	24.41
AT4G04580.1	Thale cress	nucleus	11.66	22.89
KRH36473	Soybean	nucleus	19.63	22.61
KRH11454	Soybean	nucleus	19.33	21.95
Solyc10g076460.1.1	Tomato	nucleus	19.94	21.52
Solyc02g076670.2.1	Tomato	nucleus	19.33	18.64
Solyc04g008480.1.1	Tomato	nucleus	16.87	18.52
Solyc03g006150.2.1	Tomato	extracellular, nucleus	16.26	17.26
Solyc06g066340.2.1	Tomato	nucleus	15.34	17.18
Solyc05g051060.2.1	Tomato	nucleus	14.72	16.9
Solyc08g076400.2.1	Tomato	nucleus	13.19	16.35
Solyc07g045000.2.1	Tomato	nucleus	8.59	15.91
Solyc08g005260.1.1	Tomato	nucleus	17.18	15.51
KRH45989	Soybean	nucleus	7.06	14.29
Solyc04g079600.2.1	Tomato	nucleus	12.88	13.64
Solyc11g011770.1.1	Tomato	nucleus	15.95	11.26
Os12t0591600-01	Rice	nucleus	3.37	5.5

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0044212
InterPro:Homeobox-like_sf	UniProt:K4B9U3	InterPro:Myb_dom_plants	PANTHER:PTHR31496	PANTHER:PTHR31496:SF10	SUPFAM:SSF46689
EnsemblPlantsGene:Solyc02g080720.1	EnsemblPlants:Solyc02g080720.1.1	TIGRFAMs:TIGR01557	UniParc:UPI0002769203	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:44874190..44876246

Molecular Weight (calculated)

37380.5 Da

IEP (calculated)

10.099

GRAVY (calculated)

-0.703

Length

326 amino acids

Sequence
(BLAST)

001: MMKGLEFSKN SPSLSMELGY SSNYKSSKFA IRAYIKSIMP RLRWTHDIHR RFVYAVERVG GVDRATPKMV LQIMDVKGLT ISHIKSHLQM YKNMKHQEMQ
101: GEAANGRKRN RIDGSDSMNI PQRNLVRRHN HIKGKTAMFD GSDSINFPQR NLVDRYNHIK SKAAMFDGSD QMNFPQGNLV HCYNHNNGKA PIFKGSDQMN
201: FTQRNLVHRY NYNNGKSVFD DHLNPTVTTN YLDKIASSST AFPPPWKSMP EKKMGLERRY YLFRDFFDGT ITIRDGDNDD KIVRAYGISN LPNKSATSMV
301: EEEDSHSTIS LDLSLSSYIS LDLTLG

Best Arabidopsis Sequence Match ( AT4G04605.1 )
(BLAST)

001: MKNPIVRSYV RSKVPRLRWN SDLHNSFVQA VEQLGGENRA TPKMVLQLMD VRGLTISHVK SHLQMYRGMK LEESMQEEIL AKRSVRVTGQ VTWWQFQHYL
101: HNYQRLQGNA NFFQNQQRQE AGIYEKIITF GQSSNETKEV PSDYFTCKSL YETSRAPQNK TRDDDENGEA VVAIEDDGNV VDEHDDEDAN DDEVTLSLNS
201: IKVSKSEEEL SLELTLGLKA

Arabidopsis Description

Myb-like DNA-binding domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B8R6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.