Factsheet for Solyc10g076460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g024070.2.1
Solyc02g031710.2.1
Solyc02g069180.2.1
Solyc02g069830.2.1
Solyc02g092930.1.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g061020.2.1
Solyc06g072990.1.1
Solyc08g007120.2.1
Solyc08g077460.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38300.1	Solyc02g092930.1.1	AT2G23290.1	21798944
AT2G38300.1	Solyc02g024070.2.1	AT2G34710.1	21798944
AT2G38300.1	Solyc02g069830.2.1	AT2G34710.1	21798944
AT2G38300.1	Solyc06g061020.2.1	AT4G17680.1	21798944
AT2G38300.1	Solyc08g007120.2.1	AT4G17680.1	21798944
AT2G38300.1	Solyc08g077460.2.1	AT4G17680.1	21798944
AT2G38300.1	Solyc02g031710.2.1	AT4G19700.1	21798944
AT2G38300.1	Solyc02g069180.2.1	AT4G19700.1	21798944
AT2G38300.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT2G38300.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT2G38300.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT2G38300.1	Solyc06g072990.1.1	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041071	Potato	nucleus	94.7	94.7
VIT_08s0058g00250.t01	Wine grape	nucleus	22.85	59.48
Solyc09g005030.1.1	Tomato	nucleus	27.81	57.53
Solyc06g051060.2.1	Tomato	nucleus	30.13	35.83
Os11t0106100-00	Rice	nucleus	25.17	35.68
KRH75999	Soybean	nucleus	37.75	33.24
AT2G38300.1	Thale cress	nucleus	37.42	33.24
KRH65638	Soybean	nucleus	37.42	32.66
Bra005124.1-P	Field mustard	nucleus	35.76	32.05
KRH00305	Soybean	nucleus	39.07	31.98
KRH49433	Soybean	nucleus	38.74	31.97
CDX74898	Canola	nucleus	35.76	31.58
CDX91442	Canola	nucleus	36.09	31.14
GSMUA_Achr7P22410_001	Banana	nucleus	33.77	30.72
Solyc02g080860.1.1	Tomato	nucleus	23.84	28.46
TraesCS4A01G180900.1	Wheat	nucleus	30.79	27.27
TraesCS5D01G158300.1	Wheat	nucleus	29.14	27.16
TraesCS5A01G153000.1	Wheat	nucleus	29.14	26.99
TraesCS5B01G151800.1	Wheat	nucleus	29.47	26.41
TraesCS4D01G131500.1	Wheat	nucleus	29.14	25.81
TraesCS4B01G136900.1	Wheat	nucleus	28.81	25.66
EES15503	Sorghum	nucleus	30.46	25.14
EES09087	Sorghum	nucleus	29.8	24.79
Solyc12g006280.1.1	Tomato	nucleus	14.24	24.71
Os12t0105600-01	Rice	nucleus	25.5	24.52
Zm00001d005087_P001	Maize	nucleus	27.81	24.14
Solyc03g006150.2.1	Tomato	extracellular, nucleus	24.5	24.1
Solyc02g076670.2.1	Tomato	nucleus	25.5	22.78
Solyc02g080740.1.1	Tomato	nucleus	19.87	21.66
Solyc02g080730.1.1	Tomato	nucleus	18.87	21.11
Solyc02g080720.1.1	Tomato	nucleus	21.52	19.94
Solyc04g008480.1.1	Tomato	nucleus	19.54	19.87
Solyc08g076400.2.1	Tomato	nucleus	15.89	18.25
Solyc05g051060.2.1	Tomato	nucleus	16.89	17.96
Solyc06g066340.2.1	Tomato	nucleus	17.22	17.87
Solyc04g079600.2.1	Tomato	nucleus	18.21	17.86
Solyc02g080710.1.1	Tomato	nucleus	21.19	17.83
Solyc08g005260.1.1	Tomato	nucleus	18.21	15.24
Solyc07g045000.2.1	Tomato	nucleus	7.28	12.5
Solyc11g011770.1.1	Tomato	nucleus	18.54	12.12
Solyc02g080680.1.1	Tomato	mitochondrion	8.61	11.35

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:K4D1Y8	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31314	PANTHER:PTHR31314:SF41	InterPro:SANT/Myb	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc10g076460.1	EnsemblPlants:Solyc10g076460.1.1
TIGRFAMs:TIGR01557	UniParc:UPI0002769D8B	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:+:59441472..59443075

Molecular Weight (calculated)

34159.3 Da

IEP (calculated)

7.161

GRAVY (calculated)

-0.718

Length

302 amino acids

Sequence
(BLAST)

001: MMEDSGDTEF SKTSPNSNQN EEEDENVTST KLHKDGGSSS ISTIEESEKK FSVRPYVRSK MVRLRWTPDL HRRFVHAVER LGGHDRATPK LVLQLMNIKG
101: LNIAHVKSHL QMYRSKKIDD PSQGITNHHK LCMEGGDSYI YNLSQLPMLS SFKQRFNPTF RYGDVSSMNC QDHDLMHSSI MGQSTIDKAR IGLYTTLNER
201: IFGSNPIDKL TPLFQIAEKS QARILSTPLK RKAMDCDLID LNLSLGVKQK HNSHDNDDDD DDGSTLTLSL SSQRSPSRLK EDVNYAIIED ARRGASTLDL
301: TL

Best Arabidopsis Sequence Match ( AT2G38300.1 )
(BLAST)

001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.