Factsheet for Solyc02g031710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008230.2.1
Solyc02g062230.1.1
Solyc02g084010.1.1
Solyc02g089810.2.1
Solyc03g033590.1.1
Solyc03g121640.2.1
Solyc04g009180.1.1
Solyc04g078550.2.1
Solyc05g053470.2.1
Solyc06g054260.1.1
Solyc08g006320.2.1
Solyc09g091180.2.1
Solyc09g098390.2.1
Solyc12g096350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19700.1	Solyc08g006320.2.1	AT2G24570.1	21798944
AT4G19700.1	Solyc12g096350.1.1	AT2G24570.1	21798944
AT4G19700.1	Solyc05g053470.2.1	AT2G33210.1	21798944
AT4G19700.1	Solyc09g091180.2.1	AT2G33210.1	21798944
AT4G19700.1	Solyc09g098390.2.1	AT2G43370.1	21798944
AT4G19700.1	Solyc03g121640.2.1	AT3G13860.1	21798944
AT4G19700.1	Solyc06g054260.1.1	AT4G02770.1	21798944
AT4G19700.1	Solyc04g078550.2.1	AT4G24240.1	21798944
AT4G19700.1	Solyc08g006320.2.1	AT4G31550.1	21798944
AT4G19700.1	Solyc12g096350.1.1	AT4G31550.1	21798944
AT4G19700.1	Solyc02g062230.1.1	AT4G36110.1	21798944
AT4G19700.1	Solyc02g084010.1.1	AT4G36110.1	21798944
AT4G19700.1	Solyc03g033590.1.1	AT4G36110.1	21798944
AT4G19700.1	Solyc01g008230.2.1	AT5G08330.1	21798944
AT4G19700.1	Solyc04g009180.1.1	AT5G08330.1	21798944
AT4G19700.1	Solyc02g089810.2.1	AT5G38640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062617	Potato	nucleus	87.74	90.67
Solyc02g069180.2.1	Tomato	plastid	56.45	61.84
KRH36722	Soybean	nucleus	48.06	48.06
VIT_10s0042g01070.t01	Wine grape	nucleus	46.77	47.85
KRH11729	Soybean	nucleus	47.42	46.96
CDX94520	Canola	cytosol	34.84	46.15
CDY07541	Canola	cytosol	34.84	46.15
CDY09318	Canola	cytosol	34.84	46.15
CDY21311	Canola	cytosol	34.84	46.15
KRH50476	Soybean	cytosol, nucleus, plastid	47.1	45.62
KRG89416	Soybean	nucleus	45.48	44.9
AT5G45100.1	Thale cress	cytosol	41.94	44.22
GSMUA_Achr2P13160_001	Banana	plastid	34.19	42.91
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	40.32	42.23
CDY26402	Canola	cytosol	40.0	41.89
AT4G19700.1	Thale cress	cytosol	40.65	41.45
Bra013423.1-P	Field mustard	nucleus	39.03	40.88
GSMUA_Achr7P00850_001	Banana	plastid	30.32	40.87
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	36.45	40.5
GSMUA_Achr4P23050_001	Banana	nucleus	24.52	40.43
CDY71192	Canola	cytosol	36.45	40.36
CDY13070	Canola	cytosol	36.13	40.14
CDY18062	Canola	cytosol	36.45	40.07
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	36.45	40.07
CDY51918	Canola	cytosol	37.1	40.07
GSMUA_Achr4P32070_001	Banana	nucleus	36.77	39.86
GSMUA_Achr5P02100_001	Banana	plastid	30.97	39.34
CDY71607	Canola	cytosol	38.39	38.89
Bra012532.1-P	Field mustard	nucleus	38.39	38.89
CDY01615	Canola	cytosol	38.06	38.69
CDY46345	Canola	cytosol	35.16	38.65
GSMUA_Achr4P28300_001	Banana	nucleus	30.0	38.59
GSMUA_Achr6P31690_001	Banana	nucleus	36.77	38.26
GSMUA_Achr9P09830_001	Banana	nucleus	35.81	34.58
TraesCS7B01G340700.1	Wheat	mitochondrion	33.23	33.01
TraesCS3B01G484600.1	Wheat	cytosol	29.03	32.73
TraesCS7A01G442300.1	Wheat	mitochondrion	33.23	32.49
TraesCS7D01G431300.1	Wheat	mitochondrion	32.26	31.95
TraesCS3A01G448500.1	Wheat	mitochondrion	30.0	31.74
TraesCS3D01G441000.1	Wheat	mitochondrion	29.68	31.72
TraesCS3D01G441300.1	Wheat	mitochondrion	29.68	31.72
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	24.19	31.38
TraesCS7B01G340500.1	Wheat	mitochondrion	31.61	31.11
TraesCS7B01G340600.1	Wheat	mitochondrion	31.29	31.09
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	30.32	31.02
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	30.65	30.94
HORVU4Hr1G003180.3	Barley	mitochondrion	30.65	30.94
TraesCS4B01G019600.1	Wheat	mitochondrion	30.65	30.65
TraesCS7A01G442100.1	Wheat	mitochondrion	30.97	30.57
TraesCS7A01G441900.1	Wheat	mitochondrion	30.97	30.38
HORVU7Hr1G100540.2	Barley	mitochondrion	29.68	30.26
TraesCS7D01G431200.1	Wheat	mitochondrion	29.68	29.87
TraesCS4A01G293700.1	Wheat	mitochondrion	29.35	29.55
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	29.35	28.98
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	25.16	28.78
EER91098	Sorghum	nucleus	30.97	27.04
TraesCS6D01G110700.1	Wheat	nucleus	22.9	27.0
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	28.39	26.67
HORVU6Hr1G021880.1	Barley	plastid	22.26	26.44
HORVU6Hr1G021960.1	Barley	plastid	22.26	26.44
Solyc01g111610.2.1	Tomato	cytosol	20.32	25.93
TraesCS6A01G120700.1	Wheat	nucleus	21.94	25.86
TraesCS6B01G149100.1	Wheat	nucleus	21.61	25.48
Zm00001d033419_P001	Maize	plastid	21.94	24.29
Solyc10g055560.1.1	Tomato	nucleus	19.35	22.22
Solyc04g078760.2.1	Tomato	nucleus	22.9	21.01
Solyc08g007120.2.1	Tomato	nucleus	21.94	20.54
Solyc06g061020.2.1	Tomato	nucleus	20.65	19.34
Solyc05g005210.2.1	Tomato	nucleus	20.65	19.16
Solyc08g077460.2.1	Tomato	nucleus	20.65	18.39
Solyc03g112860.2.1	Tomato	nucleus, plastid	15.81	15.17

Protein Annotations

EnsemblPlants:Solyc02g031710.2.1	EnsemblPlantsGene:Solyc02g031710.2	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR42647	PANTHER:PTHR42647:SF12	PFAM:PF13920	PFscan:PS50089
PIRSF:PIRSF036836	SEG:seg	UniParc:UPI0002768DDA	UniProt:K4B5B8	MapMan:35.1	:

Description

No Description!

Coordinates

chr2:-:26770678..26772169

Molecular Weight (calculated)

34842.2 Da

IEP (calculated)

6.002

GRAVY (calculated)

-0.645

Length

310 amino acids

Sequence
(BLAST)

001: MASVEARHLN LLNQQRNLNG FVYNTQMGSG LIPMPENYLP KTSVNTESGL TFHLPTNDVV APRKRSRDSF TPSFSTPHKH CNGLSQIPSL SFVGDDVLPL
101: VQQYQLDINS IISHHTKKIR LELEEQQKHQ SRMLVSAISE RVMKKMKEKD EQIQRIGKIN QVLQEKLKTL YMENQLWRDL AQTNEATANS LRSNLEQVLA
201: HVTDERLSVE EDAESCCGSS SSNNNNNNDN EEEEDGNGGE EEEGGVRILA GEAQDKRNRM CRRCGERESC VLLLPCRHLC LCTVCGSSLQ DVCPVCNSNM
301: NATVHVNMTS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.