Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400046745 | Potato | nucleus | 84.21 | 81.93 |
| VIT_17s0000g08570.t01 | Wine grape | nucleus | 52.94 | 51.2 |
| Solyc05g005210.2.1 | Tomato | nucleus | 38.7 | 37.43 |
| Solyc04g078760.2.1 | Tomato | nucleus | 25.39 | 24.26 |
| Solyc06g061020.2.1 | Tomato | nucleus | 20.12 | 19.64 |
| Solyc08g007120.2.1 | Tomato | nucleus | 20.12 | 19.64 |
| Solyc08g077460.2.1 | Tomato | nucleus | 20.43 | 18.97 |
| Solyc02g069180.2.1 | Tomato | plastid | 14.86 | 16.96 |
| Solyc01g111610.2.1 | Tomato | cytosol | 12.38 | 16.46 |
| Solyc02g031710.2.1 | Tomato | nucleus | 15.17 | 15.81 |
| Solyc10g055560.1.1 | Tomato | nucleus | 11.76 | 14.07 |
Protein Annotations
| EnsemblPlants:Solyc03g112860.2.1 | EnsemblPlantsGene:Solyc03g112860.2 | InterPro:E3ligase_BOI_like | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF9 |
| PIRSF:PIRSF036836 | SEG:seg | UniParc:UPI000276785F | UniProt:K4BKD9 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr3:+:63157153..63162420
Molecular Weight (calculated)
36515.8 Da
IEP (calculated)
6.514
GRAVY (calculated)
-0.628
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MESFFLTETF PHNYYTSTTI TSPHLLFLCS HSSLSSFFTS NFQMFGEGSS GNGLFPASLE GNRFQYDMTA LPQLQLFGDV TVGCSGYPIS HNVNDHPSVA
101: LRPTKRARDV EPNYSQQKLQ ISLNNNFGQN EVDQAGSILN PITVSTGLRL SYEEKERNSS VTSAPENTKA SLPARLPIDS GFKYEIDRQR EEFDHYMKVQ
201: EDNMMKGMRE LVHRQTASLL NSLQKEVSRK LYEKDVEIDN MNRKNRELGE RIRQITVEAQ SWHYRAKYNE SVVNALKSNI QQAMAHGSMQ AKEGCGDSEV
301: NDAASSTNYH LVMKTASVQV YMS
101: LRPTKRARDV EPNYSQQKLQ ISLNNNFGQN EVDQAGSILN PITVSTGLRL SYEEKERNSS VTSAPENTKA SLPARLPIDS GFKYEIDRQR EEFDHYMKVQ
201: EDNMMKGMRE LVHRQTASLL NSLQKEVSRK LYEKDVEIDN MNRKNRELGE RIRQITVEAQ SWHYRAKYNE SVVNALKSNI QQAMAHGSMQ AKEGCGDSEV
301: NDAASSTNYH LVMKTASVQV YMS
001: MLSGNNGNTA PPVFMNENQL QYQTNLRSNQ LHLLGNMGGG CTVDPVNYFA NDNLVPMIRP NKRGREAESI SNNIQRQQQK LQMSLNYNYN NTSVREEVPK
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS
Arabidopsis Description
Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.