Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400052841 | Potato | nucleus | 90.63 | 85.96 |
| Solyc08g077460.2.1 | Tomato | nucleus | 67.98 | 64.66 |
| Solyc06g061020.2.1 | Tomato | nucleus | 59.52 | 59.52 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 55.89 | 54.9 |
| KRH77271 | Soybean | plastid | 51.96 | 53.42 |
| KRH28216 | Soybean | nucleus | 52.27 | 52.58 |
| AT1G32740.1 | Thale cress | nucleus | 45.02 | 47.76 |
| KRH04275 | Soybean | nucleus | 51.36 | 47.62 |
| KRH57556 | Soybean | nucleus | 50.15 | 47.43 |
| Bra024967.1-P | Field mustard | plastid | 35.35 | 47.37 |
| CDX77733 | Canola | nucleus | 41.99 | 46.33 |
| AT5G47050.1 | Thale cress | nucleus | 41.99 | 46.33 |
| CDY33511 | Canola | nucleus | 42.3 | 46.2 |
| CDY43447 | Canola | nucleus | 41.39 | 45.36 |
| Bra017511.1-P | Field mustard | nucleus | 41.39 | 45.36 |
| CDY37172 | Canola | cytosol | 40.79 | 44.7 |
| CDY51856 | Canola | cytosol | 40.48 | 44.22 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 42.9 | 43.03 |
| CDY03162 | Canola | cytosol | 40.79 | 41.93 |
| CDY09609 | Canola | cytosol | 30.51 | 40.89 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 35.05 | 40.14 |
| AT4G17680.1 | Thale cress | nucleus | 37.76 | 39.81 |
| CDX90458 | Canola | cytosol | 36.56 | 39.8 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 32.33 | 39.78 |
| Bra022093.1-P | Field mustard | nucleus | 26.28 | 39.55 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 35.95 | 39.02 |
| Os10t0565500-01 | Rice | nucleus | 40.18 | 37.89 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 37.16 | 36.83 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 35.95 | 36.73 |
| EES05709 | Sorghum | nucleus | 38.97 | 36.54 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 35.35 | 36.45 |
| Zm00001d047069_P001 | Maize | cytosol | 36.25 | 36.14 |
| Os02t0687500-01 | Rice | cytosol, nucleus, plastid | 34.44 | 35.85 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 35.05 | 35.8 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 36.56 | 35.8 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 36.25 | 35.61 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 35.05 | 35.58 |
| KXG38894 | Sorghum | cytosol, mitochondrion, nucleus | 37.16 | 35.34 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 36.25 | 35.29 |
| HORVU6Hr1G066640.4 | Barley | nucleus | 36.56 | 35.28 |
| HORVU1Hr1G054930.3 | Barley | cytosol | 34.74 | 35.06 |
| Zm00001d029988_P001 | Maize | cytosol, mitochondrion, nucleus | 35.35 | 34.82 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 36.86 | 34.56 |
| Zm00001d017649_P001 | Maize | plastid | 34.44 | 34.44 |
| Bra012650.1-P | Field mustard | nucleus | 34.74 | 32.95 |
| Solyc01g111610.2.1 | Tomato | cytosol | 22.05 | 30.04 |
| Solyc05g005210.2.1 | Tomato | nucleus | 28.7 | 28.44 |
| Solyc10g055560.1.1 | Tomato | nucleus | 22.05 | 27.04 |
| Solyc04g078760.2.1 | Tomato | nucleus | 24.47 | 23.96 |
| Solyc02g031710.2.1 | Tomato | nucleus | 20.54 | 21.94 |
| Solyc03g112860.2.1 | Tomato | nucleus, plastid | 19.64 | 20.12 |
| Solyc02g069180.2.1 | Tomato | plastid | 16.92 | 19.79 |
Protein Annotations
| EnsemblPlants:Solyc08g007120.2.1 | EnsemblPlantsGene:Solyc08g007120.2 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF13 | PFAM:PF13920 |
| PFscan:PS50089 | PIRSF:PIRSF036836 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000276C43C | UniProt:K4CIJ9 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr8:+:1693536..1694940
Molecular Weight (calculated)
37068.6 Da
IEP (calculated)
6.911
GRAVY (calculated)
-0.617
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVQAQYPSN VLFLNRSVQE GKSQIGNNYS SLLQLQTQQQ QQQQSGVFGE ESFLNPTQMF NPRVEANSRK RGREHTLATE NPLMSIESQH QLINLAQFHN
101: NNSSQINIVS TGLQLAFGDQ LHQQQHSVSH LSLHHQSSND FLASHSKQQH HEIDHFLQLQ GEQLRRTLEE KRKRHYHALI GAMEESAARR LKEKETEVEK
201: AGRRNTELEA RASQLTAEAR AWQVKAWEQE VTAATLQAQL QQAMVNGGGM STVEGDGGGG EAEDAESVYV DPDRVVESTG RPSCKGCRKR FASVVLLPCR
301: HLCLCIECDV VAQSCPLCRS IRTSSVEVFL C
101: NNSSQINIVS TGLQLAFGDQ LHQQQHSVSH LSLHHQSSND FLASHSKQQH HEIDHFLQLQ GEQLRRTLEE KRKRHYHALI GAMEESAARR LKEKETEVEK
201: AGRRNTELEA RASQLTAEAR AWQVKAWEQE VTAATLQAQL QQAMVNGGGM STVEGDGGGG EAEDAESVYV DPDRVVESTG RPSCKGCRKR FASVVLLPCR
301: HLCLCIECDV VAQSCPLCRS IRTSSVEVFL C
001: MAVQAQHHSS NLLFLNKRNG KEKEHSNFTL QSQAAGDFLD QTNMLFNNGS SNQRKRRRET NNHQLLPMQS HQFPQVIDLS LLHNYNHPPS NMVHTGLRLF
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC
Arabidopsis Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8LCK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.