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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • cytosol 1
  • nucleus 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g113740.2.1
Solyc04g077260.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G32295.1 Solyc03g113740.2.1 AT3G48150.1 21798944
AT4G32295.1 Solyc04g077260.2.1 AT3G49690.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400082721 Potato nucleus 82.01 78.31
AT4G32295.1 Thale cress cytosol 32.15 45.8
CDX75234 Canola cytosol 32.74 43.53
Bra023956.1-P Field mustard cytosol 33.33 43.46
CDY13480 Canola cytosol 33.33 43.46
Bra011335.1-P Field mustard nucleus 32.74 41.89
CDX72353 Canola cytosol 29.79 41.74
CDX68833 Canola nucleus 31.56 41.47
KRH52430 Soybean nucleus 33.63 41.16
KRH61761 Soybean nucleus 32.74 40.36
VIT_04s0008g05520.t01 Wine grape nucleus 45.43 34.15
GSMUA_Achr11P... Banana nucleus 35.4 31.41
GSMUA_Achr6P20490_001 Banana mitochondrion 34.51 30.95
Solyc07g008100.2.1 Tomato nucleus 36.28 24.8
Protein Annotations
EnsemblPlants:Solyc08g059700.1.1EnsemblPlantsGene:Solyc08g059700.1Gene3D:1.10.246.20PANTHER:PTHR35300UniParc:UPI000276C87FUniProt:K4CKL4
MapMan:15.5.53.5.2:::::
Description
No Description!
Coordinates
chr8:+:44748594..44749893
Molecular Weight (calculated)
38756.7 Da
IEP (calculated)
8.549
GRAVY (calculated)
-0.773
Length
339 amino acids
Sequence
(BLAST)
001: MPKSTRAYEC VRKAWHSDRH QPIRGSFIQE IFRIVNEVHG SATKKNMEWQ EKLPIVVFRA EEIMYSKANS EAEYMDLKTL WDRLNDAIDT IIRREYKDES
101: NSRGLLQPCI EAALHLISTK RIRNTCPRYY PTPQANGNSH ENPFPNIQFF SKLKNSTSQS NKMLPFSTLK LPMQTTPTSP SSCSIYPLYH GCPSEPSGPK
201: FGSTSDDKSN EDKKIALSRN LNASSETSRV NFEDVSENHT VIGCDLSLRL GSFLVPCTRI EKEDEKASDL CKLNDLSPQF NRGLSFFSKE NADKNQFELS
301: SMSPDSQNLN VKSVLVKRKN GEDEQINWPV KQHFNKFKS
Best Arabidopsis Sequence Match ( AT4G32295.1 )
(BLAST)
001: MPRPGPRPYD CIRRAWHSDR HQPMRGLLIQ EIFRIVCEIH SQSTRKNTEW QEKLPVVVLR AEEIMYSKAN SEAEYMDMKT LLDRTNDAIN TIIRLDETTE
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNMLSQVF MKPNNFAPKN LAVAQENCPV SKYSAYPLCY SFRPISDSCK SKNSRPASLI
201: DATNGITFGG CECDLSLRLG PLGPPTQKRS KISSNNNN
Arabidopsis Description
Histone acetyltransferase [Source:UniProtKB/TrEMBL;Acc:Q84JY3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.