Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011335.1-P | Field mustard | nucleus | 98.82 | 95.09 |
| CDX68833 | Canola | nucleus | 92.16 | 91.09 |
| CDY13480 | Canola | cytosol | 75.29 | 73.85 |
| CDX72353 | Canola | cytosol | 68.24 | 71.9 |
| AT4G32295.1 | Thale cress | cytosol | 66.67 | 71.43 |
| KRH61761 | Soybean | nucleus | 49.8 | 46.18 |
| KRH52430 | Soybean | nucleus | 49.8 | 45.85 |
| CDY45344 | Canola | nucleus | 32.55 | 34.73 |
| CDX77461 | Canola | nucleus | 43.92 | 34.67 |
| CDX85164 | Canola | nucleus | 43.92 | 34.67 |
| CDY18077 | Canola | nucleus | 43.14 | 33.43 |
| Solyc08g059700.1.1 | Tomato | nucleus | 43.53 | 32.74 |
| GSMUA_Achr11P... | Banana | nucleus | 47.84 | 31.94 |
| VIT_04s0008g05520.t01 | Wine grape | nucleus | 55.29 | 31.26 |
| PGSC0003DMT400082721 | Potato | nucleus | 43.14 | 30.99 |
| GSMUA_Achr6P20490_001 | Banana | mitochondrion | 45.49 | 30.69 |
| CDY45343 | Canola | nucleus | 2.35 | 20.0 |
Protein Annotations
| EnsemblPlants:CDX75234 | EnsemblPlantsGene:GSBRNA2T00121091001 | Gene3D:1.10.246.20 | GO:A0A078CGI6 | PANTHER:PTHR35300 | PANTHER:PTHR35300:SF1 |
| ProteinID:CDX75234 | ProteinID:CDX75234.1 | SEG:seg | UniParc:UPI0004EF108B | MapMan:15.5.53.5.2 | : |
Description
BnaA01g04680D
Coordinates
chrLK031804:+:223782..225405
Molecular Weight (calculated)
29106.7 Da
IEP (calculated)
9.414
GRAVY (calculated)
-0.704
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRPGPRPYE CIRRVWHSDR HQPMRGLLIQ EIFRIVCEIH SQSTKKNTEW QEKLPVVVLR AEEIMYSKAN SEAEYMDMNT LLDRTNDAIN TIIRLDETTE
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST KLETILSPQY QAFMKQNNFC PKNLQKRVER CSVSKYSSYP LCYSFRVPSL PRSSNVTDSY
201: KSNKSSKPVI AADATKGTTT FDGCDLSLRL GPLGDIKTPS QKRSKISSCN NSNKS
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST KLETILSPQY QAFMKQNNFC PKNLQKRVER CSVSKYSSYP LCYSFRVPSL PRSSNVTDSY
201: KSNKSSKPVI AADATKGTTT FDGCDLSLRL GPLGDIKTPS QKRSKISSCN NSNKS
001: MPRPGPRPYD CIRRAWHSDR HQPMRGLLIQ EIFRIVCEIH SQSTRKNTEW QEKLPVVVLR AEEIMYSKAN SEAEYMDMKT LLDRTNDAIN TIIRLDETTE
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNMLSQVF MKPNNFAPKN LAVAQENCPV SKYSAYPLCY SFRPISDSCK SKNSRPASLI
201: DATNGITFGG CECDLSLRLG PLGPPTQKRS KISSNNNN
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNMLSQVF MKPNNFAPKN LAVAQENCPV SKYSAYPLCY SFRPISDSCK SKNSRPASLI
201: DATNGITFGG CECDLSLRLG PLGPPTQKRS KISSNNNN
Arabidopsis Description
Histone acetyltransferase [Source:UniProtKB/TrEMBL;Acc:Q84JY3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.