Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47700.1 | CDX73173 | AT1G75440.1 | 21798944 |
| AT2G47700.1 | CDY47522 | AT1G75440.1 | 21798944 |
| AT2G47700.1 | CDY39571 | AT3G48240.1 | 21798944 |
| AT2G47700.1 | CDY48161 | AT3G48240.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80127 | Canola | nucleus | 88.32 | 85.75 |
| AT2G47700.1 | Thale cress | nucleus | 65.76 | 67.6 |
| CDY64147 | Canola | cytosol | 20.92 | 49.04 |
| CDX85292 | Canola | cytosol, golgi, peroxisome | 22.28 | 41.62 |
| VIT_07s0005g00420.t01 | Wine grape | nucleus | 34.78 | 32.24 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 24.18 | 29.97 |
| TraesCS1D01G103800.1 | Wheat | cytosol, nucleus, plasma membrane | 32.88 | 27.88 |
| TraesCS1B01G123100.1 | Wheat | cytosol, nucleus, plasma membrane | 32.61 | 27.65 |
| EES19051 | Sorghum | nucleus | 32.07 | 27.0 |
| Os05t0154600-01 | Rice | nucleus | 31.79 | 26.83 |
| CDY27760 | Canola | cytosol | 5.98 | 26.83 |
| CDX74141 | Canola | nucleus | 30.16 | 26.75 |
| CDY18820 | Canola | nucleus | 30.43 | 26.67 |
| CDY40715 | Canola | nucleus | 29.89 | 26.51 |
| CDY05177 | Canola | nucleus | 29.35 | 26.15 |
| CDY31489 | Canola | cytosol | 24.18 | 25.8 |
| TraesCS1A01G095100.1 | Wheat | cytosol | 26.9 | 25.32 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 28.26 | 25.0 |
| CDY27759 | Canola | endoplasmic reticulum, vacuole | 24.18 | 24.52 |
| Os01t0350900-02 | Rice | cytosol, nucleus, plasma membrane | 30.16 | 24.4 |
| Zm00001d009837_P001 | Maize | cytosol, nucleus, plasma membrane | 31.79 | 24.22 |
| HORVU1Hr1G022130.3 | Barley | nucleus, plastid | 32.61 | 22.1 |
| KXG32474 | Sorghum | nucleus | 26.63 | 21.44 |
| Zm00001d040789_P001 | Maize | nucleus | 26.36 | 20.95 |
| Zm00001d037596_P001 | Maize | nucleus | 31.79 | 20.67 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 27.99 | 19.32 |
| CDX93159 | Canola | nucleus | 15.49 | 19.19 |
| CDX89655 | Canola | nucleus | 15.22 | 19.18 |
Protein Annotations
| EnsemblPlants:CDY53013 | EnsemblPlantsGene:GSBRNA2T00008330001 | Gene3D:3.30.40.10 | GO:A0A078IVP2 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF69 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY53013 | ProteinID:CDY53013.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EE20CE |
| UniProt:A0A078IVP2 | MapMan:19.2.2.1.5.3.3 | : | : | : | : |
Description
BnaC04g00170DBnaC04g00170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVP2]
Coordinates
chrLK033154:-:26179..28540
Molecular Weight (calculated)
41518.8 Da
IEP (calculated)
6.585
GRAVY (calculated)
-0.748
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGANDDDYD RNNRRIASQS TDVPGKRGNE DSASSLVEVP CSICLELVVD DGTRSMAKLQ CGHQFHLDCI GSAFNMKGTM QCPNCRNVEK GQWLFANGST
101: RLFPEFVMED WIPEEDLYAL SYPEMQYRVH WCPFGELSQA GSFEELESSA TTYHNGHHAV AMNHSYPAYI APGPASTPRT SDTSNNADDH PWNSHSSDHF
201: HQLSVAPQYH HHHHSTSFSL PGAHVIDGEI DSSAARGISH PHPFLFGYRS NPRTSPAIQG SSSAQMREHL HTQQQQHHVY NNQRQHHVNG PNLASPLVSL
301: TRRGLQPLPM PDQNVGFFLY PPPQPLSTSG GHREPESDQF HPWERDWFPH FPIPSIHRTI SSFWHRHF
101: RLFPEFVMED WIPEEDLYAL SYPEMQYRVH WCPFGELSQA GSFEELESSA TTYHNGHHAV AMNHSYPAYI APGPASTPRT SDTSNNADDH PWNSHSSDHF
201: HQLSVAPQYH HHHHSTSFSL PGAHVIDGEI DSSAARGISH PHPFLFGYRS NPRTSPAIQG SSSAQMREHL HTQQQQHHVY NNQRQHHVNG PNLASPLVSL
301: TRRGLQPLPM PDQNVGFFLY PPPQPLSTSG GHREPESDQF HPWERDWFPH FPIPSIHRTI SSFWHRHF
001: MAGAKDSGCD DDLRIAGGCD PGKRGNPEDS SSPVEVSCSI CLESVLDDGT RSKAKLQCGH QFHLDCIGSA FNMKGAMQCP NCRNVEKGQW LYANGSTRPF
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRSNQ RSSPAINSYQ GSSTQMREQH HAYNHQRQQH HANGPTLASP LISMTRRGLP
301: PPPPPPPMPD QNVGFFIYPG GHHEPETDQI HAWERDWFPH FPVPSNHRTI PSLWHRHF
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRSNQ RSSPAINSYQ GSSTQMREQH HAYNHQRQQH HANGPTLASP LISMTRRGLP
301: PPPPPPPMPD QNVGFFIYPG GHHEPETDQI HAWERDWFPH FPVPSNHRTI PSLWHRHF
Arabidopsis Description
RFI2E3 ubiquitin-protein ligase RFI2 [Source:UniProtKB/Swiss-Prot;Acc:O82239]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.