CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013110.1-P	Field mustard	nucleus	90.24	90.54
CDX89655	Canola	nucleus	72.05	73.29
CDY64147	Canola	cytosol	13.47	25.48
CDY27760	Canola	cytosol	6.4	23.17
GSMUA_Achr2P02250_001	Banana	nucleus	20.54	20.54
CDY05177	Canola	nucleus	25.59	18.4
CDY40715	Canola	nucleus	25.59	18.31
CDX74141	Canola	nucleus	25.59	18.31
AT2G15260.1	Thale cress	mitochondrion, nucleus	21.21	17.4
CDY18820	Canola	nucleus	24.58	17.38
CDX85292	Canola	cytosol, golgi, peroxisome	11.11	16.75
CDY53013	Canola	nucleus	19.19	15.49
CDY27759	Canola	endoplasmic reticulum, vacuole	18.52	15.15
GSMUA_Achr5P27050_001	Banana	nucleus	21.21	15.14
CDX80127	Canola	nucleus	19.19	15.04
Os05t0154600-01	Rice	nucleus	20.88	14.22
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	20.2	13.82
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	19.87	13.59
EES19051	Sorghum	nucleus	19.87	13.5
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	20.54	13.41
KXG32474	Sorghum	nucleus	19.87	12.91
Zm00001d040789_P001	Maize	nucleus	19.87	12.74
TraesCS1A01G095100.1	Wheat	cytosol	16.16	12.28
GSMUA_Achr8P06630_001	Banana	nucleus	21.89	12.2
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	19.53	12.01
HORVU1Hr1G022130.3	Barley	nucleus, plastid	20.88	11.42
CDY31489	Canola	cytosol	12.79	11.01
Zm00001d037596_P001	Maize	nucleus	19.19	10.07

Protein Annotations

EnsemblPlants:CDX93159	EnsemblPlantsGene:GSBRNA2T00155086001	Gene3D:3.30.40.10	GO:A0A078DXJ5	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF13639	PFscan:PS50089
ProteinID:CDX93159	ProteinID:CDX93159.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EF4C9B
MapMan:19.2.2.1.5.3.3	:	:	:	:	:

Description

BnaA03g38810D

Coordinates

chrLK031874:-:1480953..1483543

Molecular Weight (calculated)

31747.6 Da

IEP (calculated)

4.940

GRAVY (calculated)

-0.522

Length

297 amino acids

Sequence
(BLAST)

001: MVAGLISGDG IVQVEIGSTN NNNERKQFAF DLNVKPVEDD NSDFPENSDL CTICLEPLVN TRDDRRTFVT LRCGHKFHLD CIGSAFNAKG FMQCPNCMQI
101: EPGQWRYATN PPIPTISEGD WLSEEEDDDA NSDRATQSSL AASLGPYFNS QRITAIGEVQ QRAPPSRQLT FSRVLDPGVM AGRHYLSHPS FHHNPSVRNA
201: PLFPPYPNTG TLQVNGIPAA MFSSGREQVA GGISHSWTSF MYETQIGFPS SSRGGGTSVN DGDGIGVSSS NGGRGGGGNG DCNGISGGNN LSGSRPS

Best Arabidopsis Sequence Match ( AT2G15260.1 )
(BLAST)

001: MARTIKYRLL IEFHRVNKQV ERIYSKSSGS SNVNEGKRFA FDLNVEPVDE TLDLNVEPVD EENRDALNPV DEENHDSMNH VAKQNHDSSN HVDQEIRDSQ
101: NLIDEENHDS PKDSDYLGDL DLCSICRGAL VNENDVQRTL VTLKCVHKFH LDCIGSAYNA KGFMECPNCR NIEPGHWQFS DGTHFNPNGM IANNEEEEED
201: NDPGSFSQMI VKSEVCPFGC LGQRYPFDPL GRSDISMINA PMNLSCPSTS TVQLNPSDVW ESTQPFLSSR HHLMVEDEIY RMIYGDRIEM GERSGNHRGR
301: ESNGNGDNGG SSTFGGNGNG NGINATVLCS SRTGSSNYFS TSQVKVTIQR LENVHGLIGI SS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SHV0]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.