Factsheet for Bra013110.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93159	Canola	nucleus	90.54	90.24
CDX89655	Canola	nucleus	66.89	67.81
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	17.57	36.11
GSMUA_Achr2P02250_001	Banana	nucleus	20.27	20.2
Bra040540.1-P	Field mustard	nucleus	23.99	16.9
Bra001153.1-P	Field mustard	nucleus	23.65	16.87
AT2G15260.1	Thale cress	mitochondrion, nucleus	20.27	16.57
GSMUA_Achr5P27050_001	Banana	nucleus	21.62	15.38
Bra004436.1-P	Field mustard	nucleus	19.26	15.04
Os05t0154600-01	Rice	nucleus	20.27	13.76
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	19.59	13.36
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	19.26	13.13
EES19051	Sorghum	nucleus	18.92	12.81
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	19.59	12.75
Zm00001d040789_P001	Maize	nucleus	19.93	12.74
KXG32474	Sorghum	nucleus	19.59	12.69
GSMUA_Achr8P06630_001	Banana	nucleus	21.62	12.01
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	19.26	11.8
TraesCS1A01G095100.1	Wheat	cytosol	15.54	11.76
HORVU1Hr1G022130.3	Barley	nucleus, plastid	20.27	11.05
Zm00001d037596_P001	Maize	nucleus	18.58	9.72
Bra039429.1-P	Field mustard	plastid	3.72	7.91

Protein Annotations

EnsemblPlants:Bra013110.1	EnsemblPlants:Bra013110.1-P	EnsemblPlantsGene:Bra013110	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002540A5F	UniProt:M4D9F0	MapMan:19.2.2.1.5.3.3

Description

AT2G15260 (E=1e-024) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA03:-:20419280..20421746

Molecular Weight (calculated)

31708.6 Da

IEP (calculated)

4.946

GRAVY (calculated)

-0.526

Length

296 amino acids

Sequence
(BLAST)

001: MVAGLISGDG IVQVEIGSNN NNERKQFAFD LNVKPVEDDN SDFPENSDLC TICLEPLVNT RDDRRTFVTL RCGHKFHLDC IGSAFNAKGF MQCPNCMQIE
101: PGQWRYATNP PIPTISEGDW LSEEEDDDAN SDRFTQSSLA ASLGPYFNSQ RITAIGEVQQ RAPPSRQLTF SRVLEPGVMA GRHYLSHPSF HHNPSVRNAP
201: LFPPYPNTGT LQVNGIPAAM FSSGREQVAG GISHSWTSFM YETQIGFPSS SRGGGTSVND GDGIGASSSN GGRGGGGNGD CNGISGGNNL SGSRPS

Best Arabidopsis Sequence Match ( AT2G15260.1 )
(BLAST)

001: MARTIKYRLL IEFHRVNKQV ERIYSKSSGS SNVNEGKRFA FDLNVEPVDE TLDLNVEPVD EENRDALNPV DEENHDSMNH VAKQNHDSSN HVDQEIRDSQ
101: NLIDEENHDS PKDSDYLGDL DLCSICRGAL VNENDVQRTL VTLKCVHKFH LDCIGSAYNA KGFMECPNCR NIEPGHWQFS DGTHFNPNGM IANNEEEEED
201: NDPGSFSQMI VKSEVCPFGC LGQRYPFDPL GRSDISMINA PMNLSCPSTS TVQLNPSDVW ESTQPFLSSR HHLMVEDEIY RMIYGDRIEM GERSGNHRGR
301: ESNGNGDNGG SSTFGGNGNG NGINATVLCS SRTGSSNYFS TSQVKVTIQR LENVHGLIGI SS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SHV0]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.