Factsheet for GSMUA_Achr8P06630_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P04210_001
GSMUA_Achr6P29810_001
GSMUA_Achr9P10780_001
GSMUA_Achr9P25520_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47700.1	GSMUA_Achr6P29810_001	AT1G75440.1	21798944
AT2G47700.1	GSMUA_Achr9P10780_001	AT1G75440.1	21798944
AT2G47700.1	GSMUA_Achr9P25520_001	AT1G75440.1	21798944
AT2G47700.1	GSMUA_Achr5P04210_001	AT3G08690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P27050_001	Banana	nucleus	42.21	54.09
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	13.32	49.31
Os05t0154600-01	Rice	nucleus	33.58	41.05
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	32.83	40.32
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	32.83	40.32
EES19051	Sorghum	nucleus	32.65	39.82
TraesCS1A01G095100.1	Wheat	cytosol	28.89	39.39
Solyc01g099790.2.1	Tomato	nucleus	29.64	37.09
VIT_14s0060g02280.t01	Wine grape	nucleus	29.27	36.88
PGSC0003DMT400063581	Potato	nucleus	29.46	36.77
KRG96789	Soybean	nucleus	27.95	35.73
GSMUA_Achr2P02250_001	Banana	nucleus	19.89	35.69
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	30.21	35.38
KRH33887	Soybean	nucleus	28.52	35.27
KRH68500	Soybean	nucleus	27.39	35.01
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	31.14	34.37
KRG92902	Soybean	nucleus	28.14	34.17
CDY40715	Canola	nucleus	25.14	32.29
HORVU1Hr1G022130.3	Barley	nucleus, plastid	32.46	31.86
CDX74141	Canola	nucleus	24.77	31.81
Bra001153.1-P	Field mustard	nucleus	24.58	31.57
VIT_07s0005g00420.t01	Wine grape	nucleus	23.45	31.49
AT3G05545.1	Thale cress	nucleus	24.95	31.29
KXG32474	Sorghum	nucleus	26.64	31.07
CDY18820	Canola	nucleus	24.02	30.48
CDY05177	Canola	nucleus	23.45	30.27
GSMUA_Achr8P17150_001	Banana	cytosol, golgi, nucleus, plastid	12.76	30.22
GSMUA_AchrUn_...	Banana	nucleus	24.77	30.21
AT2G47700.1	Thale cress	nucleus	20.26	30.17
Bra040540.1-P	Field mustard	nucleus	23.64	30.0
CDY64147	Canola	cytosol	8.82	29.94
Zm00001d040789_P001	Maize	nucleus	25.7	29.59
Zm00001d037596_P001	Maize	nucleus	30.58	28.8
CDY27759	Canola	endoplasmic reticulum, vacuole	19.32	28.37
CDY27760	Canola	cytosol	4.32	28.05
CDY53013	Canola	nucleus	19.32	27.99
CDX80127	Canola	nucleus	19.32	27.18
Bra004436.1-P	Field mustard	nucleus	19.32	27.18
CDX85292	Canola	cytosol, golgi, peroxisome	9.01	24.37
CDX89655	Canola	nucleus	12.57	22.95
CDX93159	Canola	nucleus	12.2	21.89
Bra013110.1-P	Field mustard	nucleus	12.01	21.62
Bra039429.1-P	Field mustard	plastid	5.44	20.86
AT4G13490.1	Thale cress	cytosol, nucleus, plastid	8.44	19.91
CDY31489	Canola	cytosol	12.01	18.55
GSMUA_Achr8P17170_001	Banana	vacuole	11.44	18.15
AT2G15260.1	Thale cress	mitochondrion, nucleus	10.32	15.19

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr8G06630_001
EnsemblPlants:GSMUA_Achr8P06630_001	EnsemblPlants:GSMUA_Achr8T06630_001	InterPro:Hypoxia_induced_domain	InterPro:IPR001841	InterPro:IPR007667	InterPro:IPR013083
UniProt:M0TN66	PFAM:PF04588	PFAM:PF13639	PFscan:PS50089	PFscan:PS51503	PANTHER:PTHR22937
PANTHER:PTHR22937:SF37	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002958AA6	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G06630_001]

Coordinates

chr8:-:4301721..4314365

Molecular Weight (calculated)

58870.2 Da

IEP (calculated)

7.509

GRAVY (calculated)

-0.469

Length

533 amino acids

Sequence
(BLAST)

001: MGLGGAAKDT KEREEVVHIA CSICLEAVKS GGDRSTARLQ CGHEFHLDCI GSAFNAKGVM QCPNCRKVEE GNWLYANGSH PTPELNMDDY IHDEDLYSLG
101: YMENLLCIFF PFGGHWCPFR GLARIPSLFE EGESSPPVAF RDPLGYHAIV MENQATLSAA HPCPFIGARL PQTSSSSSNH PFDVHTDGPG YHYRWSHFPS
201: ARDVQNPLMM APSNLHYRGW QHHHPSYSPN AHVGGADAAS GFPRLRTDGL PTADSVFHPF VLSHGSGSRA GATSSSVPSL VPPYLRNHGN IHERYRLQTS
301: QSLEGTAMLQ PGSSRGFNPL DQCGPFLVSP AIPLGQTAVD AENMGSNRLC AWERECFASH HPYSRVDREC SCWGPFPPAI GVSDSNPRMT FFPPNVPEIS
401: SSQAGYNRSI PPAHMLSLIK RRERERRSER RESKGMAESR SSLESIRSWV VEHKLRTVGC LWLSGIGSSI AYNWSRPNMK TSVKIIHARL HAQALTLAAL
501: AGAAVVEYYD QQSKPRSDVD KYPNQFIAHP QKD

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.