Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64147 | Canola | cytosol | 31.3 | 68.79 |
| CDX85292 | Canola | cytosol, golgi, peroxisome | 36.81 | 64.47 |
| CDY27760 | Canola | cytosol | 6.67 | 28.05 |
| CDY53013 | Canola | nucleus | 25.8 | 24.18 |
| CDX80127 | Canola | nucleus | 26.38 | 24.01 |
| VIT_07s0005g00420.t01 | Wine grape | nucleus | 20.29 | 17.63 |
| CDX74141 | Canola | nucleus | 20.87 | 17.35 |
| CDY05177 | Canola | nucleus | 20.58 | 17.19 |
| CDY40715 | Canola | nucleus | 20.29 | 16.87 |
| CDY18820 | Canola | nucleus | 20.29 | 16.67 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 13.62 | 15.82 |
| TraesCS1B01G123100.1 | Wheat | cytosol, nucleus, plasma membrane | 17.68 | 14.06 |
| TraesCS1D01G103800.1 | Wheat | cytosol, nucleus, plasma membrane | 17.68 | 14.06 |
| CDY27759 | Canola | endoplasmic reticulum, vacuole | 14.78 | 14.05 |
| Os05t0154600-01 | Rice | nucleus | 17.1 | 13.53 |
| CDX89655 | Canola | nucleus | 11.01 | 13.01 |
| CDX93159 | Canola | nucleus | 11.01 | 12.79 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 15.36 | 12.74 |
| Os01t0350900-02 | Rice | cytosol, nucleus, plasma membrane | 16.23 | 12.31 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 18.55 | 12.01 |
| EES19051 | Sorghum | nucleus | 15.07 | 11.9 |
| Zm00001d040789_P001 | Maize | nucleus | 15.94 | 11.88 |
| KXG32474 | Sorghum | nucleus | 14.78 | 11.16 |
| HORVU1Hr1G022130.3 | Barley | nucleus, plastid | 17.39 | 11.05 |
| Zm00001d009837_P001 | Maize | cytosol, nucleus, plasma membrane | 15.36 | 10.97 |
| TraesCS1A01G095100.1 | Wheat | cytosol | 11.88 | 10.49 |
| Zm00001d037596_P001 | Maize | nucleus | 15.07 | 9.19 |
Protein Annotations
| EnsemblPlants:CDY31489 | EnsemblPlantsGene:GSBRNA2T00047775001 | Gene3D:1.20.58.2220 | InterPro:FH2_Formin | InterPro:IPR015425 | PANTHER:PTHR22937 |
| PANTHER:PTHR22937:SF69 | PFAM:PF02181 | ProteinID:CDY31489 | ProteinID:CDY31489.1 | SEG:seg | SUPFAM:SSF101447 |
| SUPFAM:SSF57850 | UniParc:UPI0004EDFC99 | UniProt:A0A078H225 | MapMan:19.2.2.1.5.3.3 | : | : |
Description
BnaC05g15980DBnaC05g15980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H225]
Coordinates
chrLK032273:-:212836..215829
Molecular Weight (calculated)
38128.6 Da
IEP (calculated)
6.397
GRAVY (calculated)
-0.113
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGANADDDR NNRRIASQST DSAADVPGKR GNEDASSLVE ISCSICLELV VDDGSRSSAK LQCGHQFHLG LSLLLSYNQS FVCYPLMGQW LFANGSTRLF
101: PEFVMEDWIP EEDLYALSYP EMGFVLVCSE LQVLSLQIHP SNTCCVMGVQ KQTRVSLLSS ISLKSQQLSD GDFFISQRSD DGFSVSLVGL VVSVGLSSVS
201: SDSRLYRSSD MKLFRRRELR RTRRIDLTTL VTRQLGKCEK LIRFGLDHLV TTVLPRANEG ATSRIEDESV FLQDSIRHSG AAVGFKLDSL LKLSDTRAAN
301: SKMTLMHYLC KVLASKGSDL LDFHKDLGSL ESASKIQLKS LAEEM
101: PEFVMEDWIP EEDLYALSYP EMGFVLVCSE LQVLSLQIHP SNTCCVMGVQ KQTRVSLLSS ISLKSQQLSD GDFFISQRSD DGFSVSLVGL VVSVGLSSVS
201: SDSRLYRSSD MKLFRRRELR RTRRIDLTTL VTRQLGKCEK LIRFGLDHLV TTVLPRANEG ATSRIEDESV FLQDSIRHSG AAVGFKLDSL LKLSDTRAAN
301: SKMTLMHYLC KVLASKGSDL LDFHKDLGSL ESASKIQLKS LAEEM
001: MAGAKDSGCD DDLRIAGGCD PGKRGNPEDS SSPVEVSCSI CLESVLDDGT RSKAKLQCGH QFHLDCIGSA FNMKGAMQCP NCRNVEKGQW LYANGSTRPF
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRLAS QTPYCSQLLA ECFTIFFWNW AL
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRLAS QTPYCSQLLA ECFTIFFWNW AL
Arabidopsis Description
RFI2E3 ubiquitin-protein ligase RFI2 [Source:UniProtKB/Swiss-Prot;Acc:O82239]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.