Factsheet for HORVU1Hr1G022130.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G002220.2
HORVU1Hr1G069530.1
HORVU3Hr1G080790.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47700.1	HORVU0Hr1G002220.2	AT3G08690.1	21798944
AT2G47700.1	HORVU1Hr1G069530.1	AT3G08690.1	21798944
AT2G47700.1	HORVU3Hr1G080790.2	AT3G08690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G095100.1	Wheat	cytosol	68.14	94.63
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	74.22	92.86
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	73.85	92.4
Os05t0154600-01	Rice	nucleus	66.67	83.03
EES19051	Sorghum	nucleus	62.25	77.35
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	60.41	67.91
Zm00001d037596_P001	Maize	nucleus	60.04	57.6
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	13.26	50.0
GSMUA_Achr2P02250_001	Banana	nucleus	20.63	37.71
KRH68500	Soybean	nucleus	28.18	36.69
KRG96789	Soybean	nucleus	27.81	36.21
KRH33887	Soybean	nucleus	28.36	35.73
VIT_14s0060g02280.t01	Wine grape	nucleus	27.81	35.7
GSMUA_Achr5P27050_001	Banana	nucleus	27.07	35.34
KRG92902	Soybean	nucleus	28.36	35.08
Solyc01g099790.2.1	Tomato	nucleus	27.26	34.74
PGSC0003DMT400063581	Potato	nucleus	27.26	34.66
AT2G47700.1	Thale cress	nucleus	22.84	34.64
VIT_07s0005g00420.t01	Wine grape	nucleus	25.23	34.51
Bra040540.1-P	Field mustard	nucleus	25.41	32.86
CDY18820	Canola	nucleus	25.23	32.62
CDY53013	Canola	nucleus	22.1	32.61
GSMUA_Achr8P06630_001	Banana	nucleus	31.86	32.46
Bra004436.1-P	Field mustard	nucleus	22.47	32.19
CDX80127	Canola	nucleus	22.47	32.19
CDY40715	Canola	nucleus	24.49	32.05
Bra001153.1-P	Field mustard	nucleus	24.49	32.05
CDX74141	Canola	nucleus	24.49	32.05
AT3G05545.1	Thale cress	nucleus	24.86	31.76
CDY05177	Canola	nucleus	23.94	31.48
CDY27759	Canola	endoplasmic reticulum, vacuole	20.26	30.3
CDY64147	Canola	cytosol	7.55	26.11
CDY27760	Canola	cytosol	3.87	25.61
CDX85292	Canola	cytosol, golgi, peroxisome	9.02	24.87
CDX89655	Canola	nucleus	11.97	22.26
CDX93159	Canola	nucleus	11.42	20.88
Bra013110.1-P	Field mustard	nucleus	11.05	20.27
AT4G13490.1	Thale cress	cytosol, nucleus, plastid	7.92	19.03
Bra039429.1-P	Field mustard	plastid	4.79	18.7
CDY31489	Canola	cytosol	11.05	17.39
AT2G15260.1	Thale cress	mitochondrion, nucleus	11.23	16.85

Protein Annotations

EnsemblPlants:HORVU1Hr1G022130.3	EnsemblPlantsGene:HORVU1Hr1G022130	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000B48521F	UniProt:A0A287EVV8	MapMan:19.2.2.1.5.3.3	:

Description

No Description!

Coordinates

chrchr1H:-:92432715..92440089

Molecular Weight (calculated)

59966.6 Da

IEP (calculated)

8.240

GRAVY (calculated)

-0.745

Length

543 amino acids

Sequence
(BLAST)

001: FVPKQPFLFP SSLPFFPRVF FLSNFSWRRG DREERGRGRR RRRRPSRLDK ARGTRGARAC DPRGAGSRFR RRDSLALAGP AVPSPLSPRI WWDPAKGRLV
101: EGRGGARGEM GAGAEPREED PVEAEEGAGG KEEKAAVSCS ICLDAVVAAS AERSTARLQC GHEFHLDCIG SAFNAKGVMQ CPNCRKIEKG NWLYANGSRP
201: SQDINMDEWA HEEDLYDVSY SEMPFRFHWC PFGRLAQLPS FFEEGESSPP VTFHDFMGQH VFPEHLSVSA APGAHPCPYV AYLHPLPSLA SSSSSHVPER
301: TMDGSAYHDP WNHLAGPSDN RPLQTVQPTD FHHNHWAHLP HSYAQSNSNN GVTEQPGVPF GTMRAARMDG DSQRRGSVVS PSYFSNGSGS RSRAPNVPPL
401: VPQFMRAHGS INEQYPQSSS SSLFAGAHRS GGMRPAPPPP QPENPTFCLF PPGSSGHSSM DTDEAGGSRF YAWERDRFAP YPLMPVDCET SWWSSQQSHG
501: ASESTPAPAP RRLFGQWIGL GRSSPENRSP EGSSYRQMHS PRM

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.