Factsheet for AT3G05545.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039429.1-P	Field mustard	plastid	27.76	84.89
CDY40715	Canola	nucleus	81.18	83.13
Bra001153.1-P	Field mustard	nucleus	80.94	82.89
CDX74141	Canola	nucleus	80.94	82.89
CDY27759	Canola	endoplasmic reticulum, vacuole	69.18	80.99
CDY05177	Canola	nucleus	78.59	80.87
CDY18820	Canola	nucleus	78.82	79.76
Bra040540.1-P	Field mustard	nucleus	78.12	79.05
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	24.71	72.92
VIT_14s0060g02280.t01	Wine grape	nucleus	49.65	49.88
KRH33887	Soybean	nucleus	49.88	49.19
KRG92902	Soybean	nucleus	50.35	48.75
KRG96789	Soybean	nucleus	47.29	48.2
KRH68500	Soybean	nucleus	46.82	47.72
PGSC0003DMT400063581	Potato	nucleus	47.29	47.07
Solyc01g099790.2.1	Tomato	nucleus	46.82	46.71
CDY27760	Canola	cytosol	8.94	46.34
GSMUA_Achr2P02250_001	Banana	nucleus	24.0	34.34
AT2G47700.1	Thale cress	nucleus	28.71	34.08
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	32.94	32.26
GSMUA_Achr5P27050_001	Banana	nucleus	31.53	32.21
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	32.71	32.03
Os05t0154600-01	Rice	nucleus	31.53	30.73
EES19051	Sorghum	nucleus	31.53	30.66
TraesCS1A01G095100.1	Wheat	cytosol	28.0	30.43
KXG32474	Sorghum	nucleus	30.12	28.01
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	29.18	27.25
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	30.12	26.5
Zm00001d040789_P001	Maize	nucleus	28.71	26.35
GSMUA_Achr8P06630_001	Banana	nucleus	31.29	24.95
HORVU1Hr1G022130.3	Barley	nucleus, plastid	31.76	24.86
Zm00001d037596_P001	Maize	nucleus	30.82	23.14
AT4G13490.1	Thale cress	cytosol, nucleus, plastid	10.82	20.35
AT2G15260.1	Thale cress	mitochondrion, nucleus	14.35	16.85

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	EntrezGene:819720	UniProt:A0A178V6W3	ProteinID:AEE74256.1	ArrayExpress:AT3G05545
EnsemblPlantsGene:AT3G05545	RefSeq:AT3G05545	TAIR:AT3G05545	RefSeq:AT3G05545-TAIR-G	EnsemblPlants:AT3G05545.1	TAIR:AT3G05545.1
EMBL:BT001921	EMBL:DQ059111	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR001841	InterPro:IPR013083	RefSeq:NP_850517.1	ProteinID:OAP01428.1	PFAM:PF13639	PO:PO:0000293
PFscan:PS50089	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	UniProt:Q84WW4	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI000000BD46	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]

Coordinates

chr3:+:1609050..1612607

Molecular Weight (calculated)

45511.7 Da

IEP (calculated)

6.370

GRAVY (calculated)

-0.703

Length

425 amino acids

Sequence
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.