Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d010618_P003 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47700.1 | Zm00001d010618_P003 | AT3G08690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG32474 | Sorghum | nucleus | 80.56 | 81.62 |
| Os01t0350900-02 | Rice | cytosol, nucleus, plasma membrane | 54.64 | 55.6 |
| Zm00001d009837_P001 | Maize | cytosol, nucleus, plasma membrane | 48.6 | 46.58 |
| Bra039430.1-P | Field mustard | cytosol, mitochondrion, nucleus | 14.25 | 45.83 |
| Zm00001d037596_P001 | Maize | nucleus | 47.3 | 38.69 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 21.17 | 33.0 |
| KRH33887 | Soybean | nucleus | 28.73 | 30.86 |
| KRG96789 | Soybean | nucleus | 27.21 | 30.22 |
| KRH68500 | Soybean | nucleus | 26.78 | 29.74 |
| KRG92902 | Soybean | nucleus | 28.08 | 29.61 |
| VIT_07s0005g00420.t01 | Wine grape | nucleus | 25.05 | 29.22 |
| VIT_14s0060g02280.t01 | Wine grape | nucleus | 26.57 | 29.08 |
| CDY05177 | Canola | nucleus | 25.7 | 28.81 |
| AT3G05545.1 | Thale cress | nucleus | 26.35 | 28.71 |
| AT2G47700.1 | Thale cress | nucleus | 22.03 | 28.49 |
| Bra040540.1-P | Field mustard | nucleus | 25.7 | 28.33 |
| CDY40715 | Canola | nucleus | 25.27 | 28.19 |
| Solyc01g099790.2.1 | Tomato | nucleus | 25.92 | 28.17 |
| PGSC0003DMT400063581 | Potato | nucleus | 25.92 | 28.1 |
| CDY18820 | Canola | nucleus | 25.49 | 28.1 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 25.05 | 27.88 |
| Bra001153.1-P | Field mustard | nucleus | 24.84 | 27.71 |
| CDX74141 | Canola | nucleus | 24.84 | 27.71 |
| CDY27759 | Canola | endoplasmic reticulum, vacuole | 20.95 | 26.72 |
| CDY53013 | Canola | nucleus | 20.95 | 26.36 |
| Bra004436.1-P | Field mustard | nucleus | 21.38 | 26.12 |
| CDX80127 | Canola | nucleus | 21.38 | 26.12 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 29.59 | 25.7 |
| CDY27760 | Canola | cytosol | 4.54 | 25.61 |
| CDY64147 | Canola | cytosol | 8.64 | 25.48 |
| Zm00001d052697_P002 | Maize | cytosol | 20.95 | 22.56 |
| CDX85292 | Canola | cytosol, golgi, peroxisome | 9.29 | 21.83 |
| CDX89655 | Canola | nucleus | 13.39 | 21.23 |
| Zm00001d031684_P001 | Maize | cytosol | 18.36 | 20.53 |
| Bra013110.1-P | Field mustard | nucleus | 12.74 | 19.93 |
| CDX93159 | Canola | nucleus | 12.74 | 19.87 |
| Bra039429.1-P | Field mustard | plastid | 5.62 | 18.7 |
| AT4G13490.1 | Thale cress | cytosol, nucleus, plastid | 8.86 | 18.14 |
| CDY31489 | Canola | cytosol | 11.88 | 15.94 |
| AT2G15260.1 | Thale cress | mitochondrion, nucleus | 10.8 | 13.81 |
Protein Annotations
| EnsemblPlants:Zm00001d040789_P001 | EnsemblPlants:Zm00001d040789_T001 | EnsemblPlantsGene:Zm00001d040789 | EntrezGene:100191616 | Gene3D:3.30.40.10 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | PFAM:PF13639 |
| PFscan:PS50089 | ProteinID:ONM32041.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0008450A4C |
| UniProt:A0A1D6MSZ4 | MapMan:19.2.2.1.5.3.3 | : | : | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr3:-:66020807..66026623
Molecular Weight (calculated)
49762.6 Da
IEP (calculated)
4.214
GRAVY (calculated)
-0.489
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGAQEDEE EITTVPEGGV GEEEQAAAEG AGEEEQLEQG AGGEGEGGEE KAPAVMLCSI CLDTVVAGGE ERSTARLQCG HEFHLDCIGS AFNAKGIMQC
101: PNCRTIEMGN WLYANGSRSS QDVNNDEWGY DDLYDHGHSE LATFVPLRIQ WCPIGRLELP SLFEYVLTSE LLVIAVSNFS LEGESPAPAT FNDFTGQFNS
201: EPMVPVPATP HPGPYLAYFQ PAPTPVSSSS LVAERTMDGA AYHDHWNTLA GLSDGRRPWA YYPQPNSDNG IAEQQGLPLG AMAVGGVDSE SQQRGSLSLF
301: YGNGSGRPRI PGVPPMAPQF TRAHGNINDQ FQQTASLFAG SQQSGGMRPL GAVGPSVPPP PENTSFCLFP PASSVPSTME AEDVNRANQF YAWERDRLAP
401: YPLMPVNSEG TWWSSSQQQP PPEPAASASR RLSGQWIGRL PLPPPENRSP DGSSFRPLHI PRM
101: PNCRTIEMGN WLYANGSRSS QDVNNDEWGY DDLYDHGHSE LATFVPLRIQ WCPIGRLELP SLFEYVLTSE LLVIAVSNFS LEGESPAPAT FNDFTGQFNS
201: EPMVPVPATP HPGPYLAYFQ PAPTPVSSSS LVAERTMDGA AYHDHWNTLA GLSDGRRPWA YYPQPNSDNG IAEQQGLPLG AMAVGGVDSE SQQRGSLSLF
301: YGNGSGRPRI PGVPPMAPQF TRAHGNINDQ FQQTASLFAG SQQSGGMRPL GAVGPSVPPP PENTSFCLFP PASSVPSTME AEDVNRANQF YAWERDRLAP
401: YPLMPVNSEG TWWSSSQQQP PPEPAASASR RLSGQWIGRL PLPPPENRSP DGSSFRPLHI PRM
001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.