CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, peroxisome
Any Predictor:	cytosol, golgi, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64147	Canola	cytosol	58.88	73.89
CDY31489	Canola	cytosol	64.47	36.81
CDY27760	Canola	cytosol	10.15	24.39
CDX80127	Canola	nucleus	43.15	22.43
CDY53013	Canola	nucleus	41.62	22.28
VIT_07s0005g00420.t01	Wine grape	nucleus	27.92	13.85
CDY18820	Canola	nucleus	28.43	13.33
CDX74141	Canola	nucleus	27.92	13.25
CDY05177	Canola	nucleus	27.41	13.08
CDY40715	Canola	nucleus	27.41	13.01
GSMUA_Achr2P02250_001	Banana	nucleus	18.78	12.46
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	25.38	11.52
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	25.38	11.52
Os05t0154600-01	Rice	nucleus	25.38	11.47
CDX93159	Canola	nucleus	16.75	11.11
GSMUA_Achr5P27050_001	Banana	nucleus	22.84	10.82
EES19051	Sorghum	nucleus	22.84	10.3
CDX89655	Canola	nucleus	15.23	10.27
CDY27759	Canola	endoplasmic reticulum, vacuole	18.27	9.92
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	22.34	9.67
KXG32474	Sorghum	nucleus	22.34	9.63
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	23.35	9.52
Zm00001d040789_P001	Maize	nucleus	21.83	9.29
HORVU1Hr1G022130.3	Barley	nucleus, plastid	24.87	9.02
GSMUA_Achr8P06630_001	Banana	nucleus	24.37	9.01
Zm00001d037596_P001	Maize	nucleus	23.35	8.13
TraesCS1A01G095100.1	Wheat	cytosol	15.74	7.93

Protein Annotations

EnsemblPlants:CDX85292	EnsemblPlantsGene:GSBRNA2T00142948001	GO:A0A078D862	PANTHER:PTHR22937	PANTHER:PTHR22937:SF69	ProteinID:CDX85292
ProteinID:CDX85292.1	SEG:seg	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0004EE0462	MapMan:19.2.2.1.5.3.3

Description

BnaC07g26030D

Coordinates

chrLK031841:-:950492..951595

Molecular Weight (calculated)

22493.9 Da

IEP (calculated)

4.631

GRAVY (calculated)

0.186

Length

197 amino acids

Sequence
(BLAST)

001: MARANADDDR NNRRIASQST DSAADVPGKC GNEDASSLVE ISCSICLELV VDDGSRSSAK LQCGHQFHLG LSLLLSYNQP FVCYPLMGQW LFANGSTRLF
101: HEFVMEDWIP EEDLYPLSYP EMSFVLVCSE LQVLSLQIHP SSQFFFSPFH HSLYMNMNEC LIITWIVYVD VFICLFFFLL SYSSFTCVFV KKNLKNF

Best Arabidopsis Sequence Match ( AT2G47700.2 )
(BLAST)

001: MAGAKDSGCD DDLRIAGGCD PGKRGNPEDS SSPVEVSCSI CLESVLDDGT RSKAKLQCGH QFHLDCIGSA FNMKGAMQCP NCRNVEKGQW LYANGSTRPF
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRLAS QTPYCSQLLA ECFTIFFWNW AL

Arabidopsis Description

RFI2E3 ubiquitin-protein ligase RFI2 [Source:UniProtKB/Swiss-Prot;Acc:O82239]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.