CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85292	Canola	cytosol, golgi, peroxisome	73.89	58.88
CDY31489	Canola	cytosol	68.79	31.3
CDY27760	Canola	cytosol	13.38	25.61
CDY53013	Canola	nucleus	49.04	20.92
CDX80127	Canola	nucleus	49.04	20.32
VIT_07s0005g00420.t01	Wine grape	nucleus	34.39	13.6
GSMUA_Achr2P02250_001	Banana	nucleus	25.48	13.47
CDX93159	Canola	nucleus	25.48	13.47
CDY05177	Canola	nucleus	33.12	12.59
CDX74141	Canola	nucleus	32.48	12.29
CDY40715	Canola	nucleus	31.85	12.05
CDX89655	Canola	nucleus	22.29	11.99
CDY18820	Canola	nucleus	31.21	11.67
GSMUA_Achr5P27050_001	Banana	nucleus	27.39	10.34
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	26.75	9.68
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	26.75	9.68
Os05t0154600-01	Rice	nucleus	26.11	9.4
KXG32474	Sorghum	nucleus	26.11	8.97
GSMUA_Achr8P06630_001	Banana	nucleus	29.94	8.82
CDY27759	Canola	endoplasmic reticulum, vacuole	20.38	8.82
EES19051	Sorghum	nucleus	24.2	8.7
Zm00001d040789_P001	Maize	nucleus	25.48	8.64
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	22.93	7.91
HORVU1Hr1G022130.3	Barley	nucleus, plastid	26.11	7.55
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	22.93	7.45
Zm00001d037596_P001	Maize	nucleus	24.84	6.89
TraesCS1A01G095100.1	Wheat	cytosol	14.01	5.63

Protein Annotations

EnsemblPlants:CDY64147	EnsemblPlantsGene:GSBRNA2T00040923001	Gene3D:3.30.40.10	InterPro:IPR013083	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937
PANTHER:PTHR22937:SF69	ProteinID:CDY64147	ProteinID:CDY64147.1	SUPFAM:SSF57850	UniParc:UPI0004EE9201	UniProt:A0A078JF89
MapMan:19.2.2.1.5.3.3	:	:	:	:	:

Description

BnaCnng43260DBnaCnng43260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JF89]

Coordinates

chrLK034408:-:8063..10493

Molecular Weight (calculated)

17385.6 Da

IEP (calculated)

5.504

GRAVY (calculated)

-0.100

Length

157 amino acids

Sequence
(BLAST)

001: MAGANADDDR NNRQIASQST DSAVDVPGKR GNEDASSLVE ISCSICLELV VDDGSRSCAK LQCGHQFHLG LSLLLSYNQP FVCYPLMGQW LFANGSTRLF
101: PEFVLEDWIP EEDLYALICG HGFVLVCSEL QVLSLQIHHS KTFSRRPGFH YKKTGGF

Best Arabidopsis Sequence Match ( AT2G47700.1 )
(BLAST)

001: MAGAKDSGCD DDLRIAGGCD PGKRGNPEDS SSPVEVSCSI CLESVLDDGT RSKAKLQCGH QFHLDCIGSA FNMKGAMQCP NCRNVEKGQW LYANGSTRPF
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRSNQ RSSPAINSYQ GSSTQMREQH HAYNHQRQQH HANGPTLASP LISMTRRGLP
301: PPPPPPPMPD QNVGFFIYPG GHHEPETDQI HAWERDWFPH FPVPSNHRTI PSLWHRHF

Arabidopsis Description

RFI2E3 ubiquitin-protein ligase RFI2 [Source:UniProtKB/Swiss-Prot;Acc:O82239]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.