CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 4
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES19701

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47700.1	EES19701	AT3G08690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	91.76	83.02
TraesCS1A01G095100.1	Wheat	cytosol	70.71	79.03
Os05t0154600-01	Rice	nucleus	78.49	78.67
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	77.8	78.34
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	77.12	77.65
Zm00001d037596_P001	Maize	nucleus	88.79	68.55
HORVU1Hr1G022130.3	Barley	nucleus, plastid	77.35	62.25
KXG32474	Sorghum	nucleus	54.69	52.3
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	16.02	48.61
KRH68500	Soybean	nucleus	35.24	36.93
KRG96789	Soybean	nucleus	34.55	36.21
KRH33887	Soybean	nucleus	35.7	36.19
GSMUA_Achr2P02250_001	Banana	nucleus	24.49	36.03
KRG92902	Soybean	nucleus	36.16	35.99
VIT_14s0060g02280.t01	Wine grape	nucleus	34.32	35.46
AT2G47700.1	Thale cress	nucleus	28.83	35.2
GSMUA_Achr5P27050_001	Banana	nucleus	33.18	34.86
PGSC0003DMT400063581	Potato	nucleus	33.18	33.96
VIT_07s0005g00420.t01	Wine grape	nucleus	30.21	33.25
Bra040540.1-P	Field mustard	nucleus	31.81	33.1
Solyc01g099790.2.1	Tomato	nucleus	32.04	32.86
CDY18820	Canola	nucleus	31.58	32.86
GSMUA_Achr8P06630_001	Banana	nucleus	39.82	32.65
CDY53013	Canola	nucleus	27.0	32.07
CDY40715	Canola	nucleus	30.21	31.81
Bra004436.1-P	Field mustard	nucleus	27.46	31.66
CDX80127	Canola	nucleus	27.46	31.66
AT3G05545.1	Thale cress	nucleus	30.66	31.53
CDY05177	Canola	nucleus	29.75	31.48
Bra001153.1-P	Field mustard	nucleus	29.52	31.08
CDX74141	Canola	nucleus	29.52	31.08
CDY27759	Canola	endoplasmic reticulum, vacuole	24.71	29.75
CDY27760	Canola	cytosol	5.03	26.83
OQU80800	Sorghum	nucleus	23.8	24.36
CDY64147	Canola	cytosol	8.7	24.2
CDX85292	Canola	cytosol, golgi, peroxisome	10.3	22.84
CDX89655	Canola	nucleus	13.73	20.55
CDX93159	Canola	nucleus	13.5	19.87
Bra013110.1-P	Field mustard	nucleus	12.81	18.92
AT4G13490.1	Thale cress	cytosol, nucleus, plastid	9.61	18.58
Bra039429.1-P	Field mustard	plastid	5.72	17.99
AT2G15260.1	Thale cress	mitochondrion, nucleus	13.04	15.75
CDY31489	Canola	cytosol	11.9	15.07

Protein Annotations

EnsemblPlants:EES19051	EnsemblPlantsGene:SORBI_3009G049300	EntrezGene:8069529	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF13639	PFscan:PS50089
ProteinID:EES19051	ProteinID:EES19051.1	RefSeq:XP_002440621.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
unigene:Sbi.1717	UniParc:UPI0001A88C8B	UniProt:C5Z0H8	MapMan:19.2.2.1.5.3.3	:	:

Description

hypothetical protein

Coordinates

chr9:-:4867461..4874011

Molecular Weight (calculated)

47639.1 Da

IEP (calculated)

6.573

GRAVY (calculated)

-0.630

Length

437 amino acids

Sequence
(BLAST)

001: MGVGAAEPKE PAAATAAGAP AEEAAAGGKE DKAAAVSCSI CLDAVLAGAG ERSTARLHCG HEFHLDCIGS AFNAKGVMQC PNCRKIEKGN WLYANGSRSA
101: HDVSMDEWAH DEDLYDVSYS EMPLRFHWCP FGRLAQLPSL FEEGESSPPI TFHDFMGQHV FTEQVAVSAA PGTTHPCPYV AYLHPLPPLT SSSSSHVPER
201: TMDRPAYHDH WNPMAGPSDV RPMQTMQPAD FHHSHWAHVP HSYAQPNSNN EQPGIPFGTR AARVDGDSQR RASVVSPSYF SNGSGSRSRP PSVPPLMPQF
301: MRAHGSISEQ YQQNSSSSLF AGAHRSGGMR PAPTPLPENP TFSLFPPGSS GHSSMETDDV GGSRFYAWER DRFAPYPLMP VDCETSWWTS QQQSHSTSEP
401: TSAPRRLFGQ WLGVGRSSPE HRSPEGSSYR QMHSPRM

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.