Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039429.1-P | Field mustard | plastid | 35.81 | 93.53 |
| CDY05177 | Canola | nucleus | 87.88 | 77.24 |
| CDX74141 | Canola | nucleus | 79.89 | 69.88 |
| AT3G05545.1 | Thale cress | nucleus | 80.99 | 69.18 |
| CDY40715 | Canola | nucleus | 78.24 | 68.43 |
| CDY18820 | Canola | nucleus | 76.31 | 65.95 |
| Bra039430.1-P | Field mustard | cytosol, mitochondrion, nucleus | 22.04 | 55.56 |
| VIT_14s0060g02280.t01 | Wine grape | nucleus | 48.76 | 41.84 |
| KRG92902 | Soybean | nucleus | 48.21 | 39.86 |
| KRH68500 | Soybean | nucleus | 45.73 | 39.81 |
| KRH33887 | Soybean | nucleus | 47.11 | 39.68 |
| Solyc01g099790.2.1 | Tomato | nucleus | 46.56 | 39.67 |
| PGSC0003DMT400063581 | Potato | nucleus | 46.01 | 39.11 |
| KRG96789 | Soybean | nucleus | 44.9 | 39.09 |
| TraesCS1A01G095100.1 | Wheat | cytosol | 30.3 | 28.13 |
| TraesCS1D01G103800.1 | Wheat | cytosol, nucleus, plasma membrane | 30.85 | 25.81 |
| Os05t0154600-01 | Rice | nucleus | 30.85 | 25.69 |
| TraesCS1B01G123100.1 | Wheat | cytosol, nucleus, plasma membrane | 30.58 | 25.58 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 20.66 | 25.25 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 28.65 | 25.0 |
| EES19051 | Sorghum | nucleus | 29.75 | 24.71 |
| CDY53013 | Canola | nucleus | 24.52 | 24.18 |
| CDX80127 | Canola | nucleus | 24.24 | 23.22 |
| Os01t0350900-02 | Rice | cytosol, nucleus, plasma membrane | 28.1 | 22.42 |
| KXG32474 | Sorghum | nucleus | 28.1 | 22.32 |
| Zm00001d009837_P001 | Maize | cytosol, nucleus, plasma membrane | 28.37 | 21.33 |
| Zm00001d040789_P001 | Maize | nucleus | 26.72 | 20.95 |
| CDY64147 | Canola | cytosol | 8.82 | 20.38 |
| HORVU1Hr1G022130.3 | Barley | nucleus, plastid | 30.3 | 20.26 |
| CDX89655 | Canola | nucleus | 16.25 | 20.21 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 28.37 | 19.32 |
| CDX93159 | Canola | nucleus | 15.15 | 18.52 |
| Zm00001d037596_P001 | Maize | nucleus | 28.65 | 18.37 |
| CDX85292 | Canola | cytosol, golgi, peroxisome | 9.92 | 18.27 |
| CDY31489 | Canola | cytosol | 14.05 | 14.78 |
| CDY27760 | Canola | cytosol | 1.38 | 6.1 |
Protein Annotations
| EnsemblPlants:CDY27759 | EnsemblPlantsGene:GSBRNA2T00038564001 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | ProteinID:CDY27759 | ProteinID:CDY27759.1 |
| SEG:seg | UniParc:UPI0004EF1635 | UniProt:A0A078GRC9 | MapMan:19.2.2.1.5.3.3 | : | : |
Description
BnaA05g31680DBnaA05g31680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRC9]
Coordinates
chrLK032209:-:316041..318236
Molecular Weight (calculated)
39472.0 Da
IEP (calculated)
6.875
GRAVY (calculated)
-0.673
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MINSKSSYES LCFVVFVHYC IGSAFNAKGV MQCPNCRKIE KGQWLYANGC RSHPEFNVED WFHEDEFFDI GGYSEVAFGV HWCPFGSSAR LPSFDDGEFS
101: PSSYHDLFSQ QGYFTEPAAP TAGHPCPYVT YIGPVHSSSS STGGVSESST FTWNTGSSVS NEVPAPYGFP VDPHYHGWDY PSPPPPPQQH FSLSVPNVGS
201: PTQPTPPPAA ARTSRANGPR PPQFMRPSYH GQTHSSSGRA GSSVAPPFPG SNARTRDRTQ ALQAYYQQST AQSHQQPDSP VVSRGPVFPS GRRPSRGSAS
301: SSSDQAGGSG FLRFNIWERE PYMPLQQAYP VNQMDREPSI WTSSYNEGAG SFLQRHGGGG GSS
101: PSSYHDLFSQ QGYFTEPAAP TAGHPCPYVT YIGPVHSSSS STGGVSESST FTWNTGSSVS NEVPAPYGFP VDPHYHGWDY PSPPPPPQQH FSLSVPNVGS
201: PTQPTPPPAA ARTSRANGPR PPQFMRPSYH GQTHSSSGRA GSSVAPPFPG SNARTRDRTQ ALQAYYQQST AQSHQQPDSP VVSRGPVFPS GRRPSRGSAS
301: SSSDQAGGSG FLRFNIWERE PYMPLQQAYP VNQMDREPSI WTSSYNEGAG SFLQRHGGGG GSS
001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.