CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96789	Soybean	nucleus	93.29	93.29
KRH33887	Soybean	nucleus	84.17	81.44
KRG92902	Soybean	nucleus	81.3	77.22
VIT_14s0060g02280.t01	Wine grape	nucleus	70.5	69.5
Solyc01g099790.2.1	Tomato	nucleus	63.31	61.97
PGSC0003DMT400063581	Potato	nucleus	63.07	61.59
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	19.42	56.25
CDY40715	Canola	nucleus	47.48	47.71
Bra001153.1-P	Field mustard	nucleus	46.76	46.99
CDX74141	Canola	nucleus	46.76	46.99
AT3G05545.1	Thale cress	nucleus	47.72	46.82
CDY05177	Canola	nucleus	46.04	46.49
CDY18820	Canola	nucleus	46.28	45.95
CDY27759	Canola	endoplasmic reticulum, vacuole	39.81	45.73
Bra040540.1-P	Field mustard	nucleus	45.8	45.48
Bra039429.1-P	Field mustard	plastid	13.67	41.01
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	37.65	36.18
GSMUA_Achr2P02250_001	Banana	nucleus	25.66	36.03
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	37.41	35.94
Os05t0154600-01	Rice	nucleus	37.17	35.55
EES19051	Sorghum	nucleus	36.93	35.24
GSMUA_Achr5P27050_001	Banana	nucleus	35.01	35.1
TraesCS1A01G095100.1	Wheat	cytosol	32.37	34.53
CDY27760	Canola	cytosol	6.47	32.93
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	36.93	31.88
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	33.33	30.55
HORVU1Hr1G022130.3	Barley	nucleus, plastid	36.69	28.18
KXG32474	Sorghum	nucleus	30.46	27.79
GSMUA_Achr8P06630_001	Banana	nucleus	35.01	27.39
Zm00001d037596_P001	Maize	nucleus	36.45	26.86
Zm00001d040789_P001	Maize	nucleus	29.74	26.78

Protein Annotations

EMBL:ACUP02002119	EnsemblPlants:KRH68500	EnsemblPlantsGene:GLYMA_03G235100	EntrezGene:100807331	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF13639
PFscan:PS50089	ProteinID:KRH68500	ProteinID:KRH68500.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI000233A1AF	UniProt:I1JR99	MapMan:19.2.2.1.5.3.3	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:43544048..43549894

Molecular Weight (calculated)

45725.3 Da

IEP (calculated)

6.816

GRAVY (calculated)

-0.632

Length

417 amino acids

Sequence
(BLAST)

001: MGLGNDDDDG DTHKSFGSVP CSICLEAVTD NGDRSWAKLQ CGHQFHLDCI GSAFNIKGAM QCPNCRKIEK GQWLYANGCR SYPEFSMDEW THDEDLYDVS
101: YSEMSFGVHW CPFGNLTRLP SSFEEGDFSS IAYHDMLGQQ AIFAEHTAVS SASHPCPYIA YFGPIHPSTS NSGLTVSEAS NFNHWNGPPV PGDMPTSYTF
201: PAVDLHYHSW EHNSSHFSSA NSRLGTSEQT SVSPGSQRPA RGGSDVPRSG SFMHPFLVGH SSAARAGNSV ASSMIPPYPG SNARARDRVQ ALQAYYQPQL
301: PHNSATIRTP VASSTRRSSS HSGSVQLAPV ASSPDRSAGF VYIPSGSSGH NFQEETHLPS RFHAREREHL PSLPLNHVGR ESSWRAYHQT ASVSDPSIRS
401: SSFRLRHESD RMPSQNR

Best Arabidopsis Sequence Match ( AT4G13490.1 )
(BLAST)

001: MSLESDIKES KRVVEPFDDD DCAVCLEPLA NDADERTVVK LRCSHKFHLD CVGSSFNIKN KMECPCCRQI EKGKWLFAEP VDQLEEDDMS PLDMLTNMVS
101: PSFLHIDDGI FTNIASVLFP NALNQISNNA NVSSNPLGEP RNTLLDTRMQ RQVDEHVAST VDSERRLPDM LFELHDRTGG SGPSGYGRER SGGEGGENSC
201: GGEAVAEEDQ VGEAAEGAEM MDNLNF

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9T0H0]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.