Factsheet for PGSC0003DMT400063581

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099790.2.1	Tomato	nucleus	92.97	93.19
VIT_14s0060g02280.t01	Wine grape	nucleus	70.73	71.39
KRH33887	Soybean	nucleus	64.87	64.27
KRG96789	Soybean	nucleus	62.06	63.55
KRH68500	Soybean	nucleus	61.59	63.07
KRG92902	Soybean	nucleus	62.76	61.05
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	18.5	54.86
CDY05177	Canola	nucleus	46.14	47.7
AT3G05545.1	Thale cress	nucleus	47.07	47.29
CDX74141	Canola	nucleus	45.43	46.75
Bra001153.1-P	Field mustard	nucleus	45.2	46.51
CDY40715	Canola	nucleus	44.73	46.02
CDY27759	Canola	endoplasmic reticulum, vacuole	39.11	46.01
CDY18820	Canola	nucleus	44.5	45.24
Bra040540.1-P	Field mustard	nucleus	44.03	44.76
Bra039429.1-P	Field mustard	plastid	14.29	43.88
GSMUA_Achr2P02250_001	Banana	nucleus	26.0	37.37
Os05t0154600-01	Rice	nucleus	36.77	36.01
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	35.36	34.79
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	34.89	34.33
CDY27760	Canola	cytosol	6.56	34.15
GSMUA_Achr5P27050_001	Banana	nucleus	33.26	34.13
EES19051	Sorghum	nucleus	33.96	33.18
TraesCS1A01G095100.1	Wheat	cytosol	29.51	32.23
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	33.26	31.21
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	34.19	30.23
GSMUA_Achr8P06630_001	Banana	nucleus	36.77	29.46
HORVU1Hr1G022130.3	Barley	nucleus, plastid	34.66	27.26
KXG32474	Sorghum	nucleus	29.04	27.13
Zm00001d037596_P001	Maize	nucleus	34.66	26.15
Zm00001d040789_P001	Maize	nucleus	28.1	25.92

Protein Annotations

EntrezGene:102581385	MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:M1CAU3	PFAM:PF13639	EnsemblPlantsGene:PGSC0003DMG400024717
PGSC:PGSC0003DMG400024717	EnsemblPlants:PGSC0003DMT400063581	PFscan:PS50089	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI000294E0A5	RefSeq:XP_006344682.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024717]

Coordinates

chr1:+:77514904..77523016

Molecular Weight (calculated)

46208.8 Da

IEP (calculated)

6.383

GRAVY (calculated)

-0.587

Length

427 amino acids

Sequence
(BLAST)

001: MGLNDVDLTD DGDGGGGGDV GGGEDKASAV SCSICLEAVT DNGDRSWSKL QCGHQFHLDC IGSAFNIKGQ MQCPNCRKIE KGQWLYASGC RPLPDFNMED
101: WAHDEDLYDL SYTEMSFGVH WCPFSGLTRL PSSYDEGELS SSAYHDLLGQ HAIFADHTAV SSAAHPCPYI AYVGIHPSSS NSSGSINDGL NFNNHWTSSS
201: VPNEMPASYA FPGMDVHYHS WDHHSSFPMA NSRVGTADQS SVPSVTQRVA RTNADIPRPG SFVPPFLVGH GSAARAGSSV ASPMIPPYPG SVARARDRVQ
301: ALQAYFQQPS NSPAVRTPVM SATRRSNNHR GLAQVGPTAS SSDQAGGFYF YPSSSSGRNF QEAENPVSNR YHAWEREHLP TFPFSQVDRD PIWGPFHHTG
401: VGSDSGSRSG SFRPRHGSER MPSQNRS

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.