CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27759	Canola	endoplasmic reticulum, vacuole	77.24	87.88
AT3G05545.1	Thale cress	nucleus	80.87	78.59
CDY40715	Canola	nucleus	78.45	78.07
CDX74141	Canola	nucleus	77.97	77.59
CDY18820	Canola	nucleus	72.64	71.43
CDY27760	Canola	cytosol	10.17	51.22
VIT_14s0060g02280.t01	Wine grape	nucleus	49.88	48.7
KRH33887	Soybean	nucleus	48.18	46.17
PGSC0003DMT400063581	Potato	nucleus	47.7	46.14
KRH68500	Soybean	nucleus	46.49	46.04
KRG96789	Soybean	nucleus	46.25	45.8
KRG92902	Soybean	nucleus	48.43	45.56
Solyc01g099790.2.1	Tomato	nucleus	46.97	45.54
CDY64147	Canola	cytosol	12.59	33.12
GSMUA_Achr2P02250_001	Banana	nucleus	23.49	32.66
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	32.45	30.88
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	32.45	30.88
GSMUA_Achr5P27050_001	Banana	nucleus	30.99	30.77
Os05t0154600-01	Rice	nucleus	32.45	30.73
EES19051	Sorghum	nucleus	31.48	29.75
CDY53013	Canola	nucleus	26.15	29.35
TraesCS1A01G095100.1	Wheat	cytosol	27.12	28.64
CDX80127	Canola	nucleus	26.15	28.5
KXG32474	Sorghum	nucleus	31.23	28.23
CDX89655	Canola	nucleus	19.61	27.74
CDX85292	Canola	cytosol, golgi, peroxisome	13.08	27.41
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	29.78	27.03
Zm00001d040789_P001	Maize	nucleus	28.81	25.7
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	30.02	25.67
CDX93159	Canola	nucleus	18.4	25.59
HORVU1Hr1G022130.3	Barley	nucleus, plastid	31.48	23.94
GSMUA_Achr8P06630_001	Banana	nucleus	30.27	23.45
Zm00001d037596_P001	Maize	nucleus	30.75	22.44
CDY31489	Canola	cytosol	17.19	20.58

Protein Annotations

EnsemblPlants:CDY05177	EnsemblPlantsGene:GSBRNA2T00119981001	Gene3D:3.30.40.10	GO:A0A078EW40	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF13639	PFscan:PS50089
ProteinID:CDY05177	ProteinID:CDY05177.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EDCC8F
MapMan:19.2.2.1.5.3.3	:	:	:	:	:

Description

BnaC05g46260D

Coordinates

chrLK031960:+:218294..221176

Molecular Weight (calculated)

44173.3 Da

IEP (calculated)

6.336

GRAVY (calculated)

-0.631

Length

413 amino acids

Sequence
(BLAST)

001: MGLGNKLNKF NFVGTDLAHE GGAADGGDPR DEGDGFGSVA CSICLDTVAK DGDRAWANLQ CGHQFHLDCI GSAFNAKGVM QCPNCRKIEK GQWLYANGCR
101: SHPEFNVEDW VHEEEFFDIG GYSEVAFGVH WCPFGSSARL PSFDDGEFSP SSYHDLLGQQ GYFTEPAAPS AGRPCPYVTY IGPVHSSSSS TVGAAGGVSE
201: SSSFTWNTGS SVSSEVPAPY GFPVDPHYHS WDYHSPPPPP QQHFSLSVPN VGSPTQPAPP PAAARTSRAN GPRPPQFMRP SYHGQTHSSS GRAGSSVAPP
301: FPGSNARTRD RTQALQAYYQ QSTAQSDSPV VSRGPVFPSG RRPSRGSTSS SSSSDQAGGS GFLRFNIWER EPYMPLQQAY PVNQMDREPS IWTSSFNEGS
401: GSFLQRHGGG GSS

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.