Factsheet for Zm00001d037596_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010618_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47700.1	Zm00001d010618_P003	AT3G08690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19051	Sorghum	nucleus	68.55	88.79
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	65.72	77.02
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	58.48	76.27
TraesCS1A01G095100.1	Wheat	cytosol	52.65	76.21
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	57.95	75.58
Os05t0154600-01	Rice	nucleus	58.13	75.46
HORVU1Hr1G022130.3	Barley	nucleus, plastid	57.6	60.04
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	12.54	49.31
Zm00001d040789_P001	Maize	nucleus	38.69	47.3
KRH68500	Soybean	nucleus	26.86	36.45
KRG96789	Soybean	nucleus	26.5	35.97
GSMUA_Achr2P02250_001	Banana	nucleus	18.73	35.69
KRH33887	Soybean	nucleus	27.03	35.5
KRG92902	Soybean	nucleus	27.21	35.08
PGSC0003DMT400063581	Potato	nucleus	26.15	34.66
AT2G47700.1	Thale cress	nucleus	21.91	34.64
VIT_14s0060g02280.t01	Wine grape	nucleus	25.8	34.52
GSMUA_Achr5P27050_001	Banana	nucleus	25.09	34.13
VIT_07s0005g00420.t01	Wine grape	nucleus	23.85	34.01
Solyc01g099790.2.1	Tomato	nucleus	24.91	33.1
Bra040540.1-P	Field mustard	nucleus	24.03	32.38
CDY18820	Canola	nucleus	23.85	32.14
CDY53013	Canola	nucleus	20.67	31.79
CDX80127	Canola	nucleus	20.67	30.87
Bra004436.1-P	Field mustard	nucleus	20.67	30.87
CDY40715	Canola	nucleus	22.61	30.84
AT3G05545.1	Thale cress	nucleus	23.14	30.82
CDY05177	Canola	nucleus	22.44	30.75
CDX74141	Canola	nucleus	22.44	30.6
Bra001153.1-P	Field mustard	nucleus	22.44	30.6
GSMUA_Achr8P06630_001	Banana	nucleus	28.8	30.58
CDY27759	Canola	endoplasmic reticulum, vacuole	18.37	28.65
CDY27760	Canola	cytosol	4.06	28.05
CDY64147	Canola	cytosol	6.89	24.84
Zm00001d031684_P001	Maize	cytosol	17.31	23.67
CDX85292	Canola	cytosol, golgi, peroxisome	8.13	23.35
Zm00001d052697_P002	Maize	cytosol	17.67	23.26
AT4G13490.1	Thale cress	cytosol, nucleus, plastid	8.13	20.35
CDX89655	Canola	nucleus	10.42	20.21
CDX93159	Canola	nucleus	10.07	19.19
Bra013110.1-P	Field mustard	nucleus	9.72	18.58
Bra039429.1-P	Field mustard	plastid	4.24	17.27
AT2G15260.1	Thale cress	mitochondrion, nucleus	9.89	15.47
CDY31489	Canola	cytosol	9.19	15.07

Protein Annotations

EnsemblPlants:Zm00001d037596_P001	EnsemblPlants:Zm00001d037596_T001	EnsemblPlantsGene:Zm00001d037596	EntrezGene:100280330	Gene3D:1.25.40.180	GO:GO:0003674
GO:GO:0005488	InterPro:ARM-type_fold	InterPro:IPR016021	InterPro:MIF4-like_sf	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37
ProteinID:AQK84403.1	SEG:seg	SUPFAM:SSF48371	UniParc:UPI0008425984	UniProt:A0A1D6LZ86	MapMan:19.2.2.1.5.3.3

Description

RING/U-box superfamily protein

Coordinates

chr6:-:130902727..130912317

Molecular Weight (calculated)

61790.8 Da

IEP (calculated)

6.199

GRAVY (calculated)

-0.529

Length

566 amino acids

Sequence
(BLAST)

001: MGVGAEPKDQ AATAAGVPAE QDEAGGKEDK AAAVSCSICL DAVLAASGER STARLHCGHE FHLDASLVSS GTHNVNLQGI SVGNATLQLP TSTVDSDDST
101: MGYGDVQLAA SDLIELGYDD FHCYFVKKLI STAIDKHEKE KEMASVLLSY LYGDVKVLKD NEPIPKLVSV VNPRNPSRAF IPRPMFEKIS DLCKNADCIG
201: SAFNAKGVMQ CPNCRKIEKG NWLYANGSRS AHDVSMDEWA HDEDLYDVSY SDMPFRFHWC PFGRLTQLPS LFEEGESSPP VTFHDFMGQH VFTEQVAVSA
301: AAGTTNPCPY VAYLHPLTPL TSLSSSHVPD RTMDRPAYHD HWNPMAGPSD VRSMQTMQPA DFHHSHWAHV PHSYGQPNSN NEQPGIPFGA RAVRVDGDSQ
401: RRASVVSPSY FSNGSGSRSR PPNVPPLMPQ FMRAHGSISE QYQQNSSSSL FAGAHRSGGM RPAPTPLPEN PTFTLFPPGS SGHSSMETDD AGGSRFYAWE
501: GDRFAPYPLM PVDCETSWRT SQQQSHQSTS EPTSAPRRLF GQWLAVGRPS PSPEGSSYRQ LHSPRM

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.