CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64147	Canola	cytosol	25.61	13.38
CDX74141	Canola	nucleus	52.44	10.36
CDY05177	Canola	nucleus	51.22	10.17
CDX85292	Canola	cytosol, golgi, peroxisome	24.39	10.15
CDY40715	Canola	nucleus	51.22	10.12
AT3G05545.1	Thale cress	nucleus	46.34	8.94
CDY18820	Canola	nucleus	39.02	7.62
KRH33887	Soybean	nucleus	36.59	6.96
KRG96789	Soybean	nucleus	35.37	6.95
VIT_14s0060g02280.t01	Wine grape	nucleus	35.37	6.86
KRG92902	Soybean	nucleus	36.59	6.83
CDY31489	Canola	cytosol	28.05	6.67
PGSC0003DMT400063581	Potato	nucleus	34.15	6.56
CDX89655	Canola	nucleus	23.17	6.51
KRH68500	Soybean	nucleus	32.93	6.47
GSMUA_Achr2P02250_001	Banana	nucleus	23.17	6.4
CDX93159	Canola	nucleus	23.17	6.4
CDY53013	Canola	nucleus	26.83	5.98
Solyc01g099790.2.1	Tomato	nucleus	30.49	5.87
CDX80127	Canola	nucleus	26.83	5.8
GSMUA_Achr5P27050_001	Banana	nucleus	26.83	5.29
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	26.83	5.07
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	26.83	5.07
EES19051	Sorghum	nucleus	26.83	5.03
KXG32474	Sorghum	nucleus	28.05	5.03
Os05t0154600-01	Rice	nucleus	25.61	4.82
Zm00001d040789_P001	Maize	nucleus	25.61	4.54
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	24.39	4.4
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	25.61	4.35
GSMUA_Achr8P06630_001	Banana	nucleus	28.05	4.32
Zm00001d037596_P001	Maize	nucleus	28.05	4.06
HORVU1Hr1G022130.3	Barley	nucleus, plastid	25.61	3.87
CDY27759	Canola	endoplasmic reticulum, vacuole	6.1	1.38
TraesCS1A01G095100.1	Wheat	cytosol	3.66	0.77

Protein Annotations

EnsemblPlants:CDY27760	EnsemblPlantsGene:GSBRNA2T00038565001	Gene3D:3.30.40.10	GO:A0A078GMG6	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF17123	ProteinID:CDY27760
ProteinID:CDY27760.1	SUPFAM:SSF57850	UniParc:UPI0004EED54C	UniProt:A0A078GMG6	MapMan:35.2	:

Description

BnaA05g31690DBnaA05g31690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMG6]

Coordinates

chrLK032209:-:318340..319261

Molecular Weight (calculated)

8562.9 Da

IEP (calculated)

4.472

GRAVY (calculated)

-0.252

Length

82 amino acids

Sequence
(BLAST)

1: MGLGNKLNKF NFGDTDLAHE GGAADGGDPR DEGDGFGSAA CSICLDTVAK DGDRAWANLQ CGHLFHLVGL DDHSLITNAK FV

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.