CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33887	Soybean	nucleus	91.12	92.81
KRH68500	Soybean	nucleus	77.22	81.3
KRG96789	Soybean	nucleus	77.22	81.3
VIT_14s0060g02280.t01	Wine grape	nucleus	70.61	73.29
PGSC0003DMT400063581	Potato	nucleus	61.05	62.76
Solyc01g099790.2.1	Tomato	nucleus	60.82	62.68
Bra039430.1-P	Field mustard	cytosol, mitochondrion, nucleus	19.36	59.03
AT3G05545.1	Thale cress	nucleus	48.75	50.35
Bra001153.1-P	Field mustard	nucleus	46.92	49.64
CDX74141	Canola	nucleus	46.92	49.64
CDY40715	Canola	nucleus	46.47	49.16
CDY05177	Canola	nucleus	45.56	48.43
CDY18820	Canola	nucleus	46.24	48.33
CDY27759	Canola	endoplasmic reticulum, vacuole	39.86	48.21
Bra040540.1-P	Field mustard	nucleus	45.79	47.86
Bra039429.1-P	Field mustard	plastid	12.53	39.57
GSMUA_Achr2P02250_001	Banana	nucleus	25.51	37.71
CDY27760	Canola	cytosol	6.83	36.59
TraesCS1D01G103800.1	Wheat	cytosol, nucleus, plasma membrane	35.76	36.18
EES19051	Sorghum	nucleus	35.99	36.16
Os05t0154600-01	Rice	nucleus	35.76	36.01
TraesCS1B01G123100.1	Wheat	cytosol, nucleus, plasma membrane	35.54	35.94
TraesCS1A01G095100.1	Wheat	cytosol	31.21	35.04
GSMUA_Achr5P27050_001	Banana	nucleus	32.8	34.62
Zm00001d009837_P001	Maize	cytosol, nucleus, plasma membrane	35.54	32.3
Os01t0350900-02	Rice	cytosol, nucleus, plasma membrane	33.03	31.87
KXG32474	Sorghum	nucleus	31.66	30.42
HORVU1Hr1G022130.3	Barley	nucleus, plastid	35.08	28.36
GSMUA_Achr8P06630_001	Banana	nucleus	34.17	28.14
Zm00001d040789_P001	Maize	nucleus	29.61	28.08
Zm00001d037596_P001	Maize	nucleus	35.08	27.21

Protein Annotations

EMBL:ACUP02012770	EnsemblPlants:KRG92902	EnsemblPlantsGene:GLYMA_20G236700	EntrezGene:100789014	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF37	PFAM:PF13639
PFscan:PS50089	ProteinID:KRG92902	ProteinID:KRG92902.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI000233DDCD	UniProt:I1NJ17	MapMan:19.2.2.1.5.3.3	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:46882722..46890781

Molecular Weight (calculated)

47953.3 Da

IEP (calculated)

6.567

GRAVY (calculated)

-0.752

Length

439 amino acids

Sequence
(BLAST)

001: MGLGNDEEED NNNNNNNNKN NNDKVVDDGD AGGGKSFGSV SCSICLEVVA DNGDRSWSKL QCGHQFHLDC IGSAFNIKGA MQCPNCRKIE KGQWLYANGC
101: RSYPEFSMDE WTHDEDLYDL SYSEMSFGVH WCPFGNLARL PSSFEEGEFS SSAYHDVLGQ HAIFAEHTAV SSASHPCPYI AYFGPIHPSS SNSGGTVSEA
201: SNFNHWNGSS VPSDMPTSYT FPAVDLHYHS WEHHSPPFST ASSRLVAADQ PSVSPGSQRP ARGGSDVPRS GSFMHPFLVG HSSAARVGSS VASSMIPPYP
301: GSNARTRDRV QALQAYYQPQ QPPNSTTMRT PIASGTRRSS SHNGSPQLAP ITTSSDQSGG FFLIPSSSSG HNFQEENHHL PNHFHAWERD HLPSLSLSHV
401: DRDSGWRAYH QATSRSDPGT RSSSFRLRHG SDRTPSQNR

Best Arabidopsis Sequence Match ( AT3G05545.1 )
(BLAST)

001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.