Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001153.1-P | Field mustard | nucleus | 99.52 | 99.52 |
| CDY40715 | Canola | nucleus | 91.81 | 91.81 |
| AT3G05545.1 | Thale cress | nucleus | 82.89 | 80.94 |
| CDY27759 | Canola | endoplasmic reticulum, vacuole | 69.88 | 79.89 |
| CDY05177 | Canola | nucleus | 77.59 | 77.97 |
| CDY18820 | Canola | nucleus | 77.35 | 76.43 |
| CDY27760 | Canola | cytosol | 10.36 | 52.44 |
| VIT_14s0060g02280.t01 | Wine grape | nucleus | 49.4 | 48.46 |
| KRG92902 | Soybean | nucleus | 49.64 | 46.92 |
| KRH33887 | Soybean | nucleus | 48.67 | 46.87 |
| KRH68500 | Soybean | nucleus | 46.99 | 46.76 |
| KRG96789 | Soybean | nucleus | 46.27 | 46.04 |
| PGSC0003DMT400063581 | Potato | nucleus | 46.75 | 45.43 |
| Solyc01g099790.2.1 | Tomato | nucleus | 46.02 | 44.84 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 24.58 | 34.34 |
| CDY64147 | Canola | cytosol | 12.29 | 32.48 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 32.05 | 31.97 |
| TraesCS1B01G123100.1 | Wheat | cytosol, nucleus, plasma membrane | 33.01 | 31.57 |
| TraesCS1D01G103800.1 | Wheat | cytosol, nucleus, plasma membrane | 33.01 | 31.57 |
| Os05t0154600-01 | Rice | nucleus | 32.05 | 30.5 |
| CDY53013 | Canola | nucleus | 26.75 | 30.16 |
| CDX80127 | Canola | nucleus | 27.23 | 29.82 |
| EES19051 | Sorghum | nucleus | 31.08 | 29.52 |
| TraesCS1A01G095100.1 | Wheat | cytosol | 27.71 | 29.41 |
| CDX85292 | Canola | cytosol, golgi, peroxisome | 13.25 | 27.92 |
| CDX89655 | Canola | nucleus | 19.28 | 27.4 |
| Os01t0350900-02 | Rice | cytosol, nucleus, plasma membrane | 29.16 | 26.59 |
| KXG32474 | Sorghum | nucleus | 28.92 | 26.26 |
| CDX93159 | Canola | nucleus | 18.31 | 25.59 |
| Zm00001d009837_P001 | Maize | cytosol, nucleus, plasma membrane | 29.4 | 25.26 |
| Zm00001d040789_P001 | Maize | nucleus | 27.71 | 24.84 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 31.81 | 24.77 |
| HORVU1Hr1G022130.3 | Barley | nucleus, plastid | 32.05 | 24.49 |
| Zm00001d037596_P001 | Maize | nucleus | 30.6 | 22.44 |
| CDY31489 | Canola | cytosol | 17.35 | 20.87 |
Protein Annotations
| EnsemblPlants:CDX74141 | EnsemblPlantsGene:GSBRNA2T00111900001 | Gene3D:3.30.40.10 | GO:A0A078CAN3 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX74141 | ProteinID:CDX74141.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EF1E6F |
| MapMan:19.2.2.1.5.3.3 | : | : | : | : | : |
Description
BnaA03g29060D
Coordinates
chrLK031800:-:1518998..1521826
Molecular Weight (calculated)
44800.1 Da
IEP (calculated)
6.621
GRAVY (calculated)
-0.760
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLGNKVNKF NFGDNEHLPD EGGGGEEGDG FGSVACSICL DTVAKDGDRA WANLQCGHQF HLDCIGSAFN AKGVMQCPNC RKVEKGQWLY ANGCRSHPEF
101: NVEDWVHEEE IYDIGSYPEM AFGVHWCPFG SSARLPSFED GDFSPSSYHD LLNQQGYFTE PPAPTAAGHP CPYVTYIGPV HSSSSSSAGA AGVSDSPSFT
201: SHWNTGSSAE VPTPYGFPHY HGWEYHSPPP TPPQHFSPSG PHVGSPTHPT PPPASARTSR ANGSDVIRPR MPQFMRPSYH GHSSSGRAGS SVASVPRTPP
301: FPGSNVRTRD RTQALQAYYQ QSTAQQHQPD SPIVSRGPVF PSGRRPSRGS TSSSSDQAGG GSGFLRFNIW EREPYMQPQQ AYQVNQMDRE PSIWASSFNE
401: GGGSFHQRHG GGGPS
101: NVEDWVHEEE IYDIGSYPEM AFGVHWCPFG SSARLPSFED GDFSPSSYHD LLNQQGYFTE PPAPTAAGHP CPYVTYIGPV HSSSSSSAGA AGVSDSPSFT
201: SHWNTGSSAE VPTPYGFPHY HGWEYHSPPP TPPQHFSPSG PHVGSPTHPT PPPASARTSR ANGSDVIRPR MPQFMRPSYH GHSSSGRAGS SVASVPRTPP
301: FPGSNVRTRD RTQALQAYYQ QSTAQQHQPD SPIVSRGPVF PSGRRPSRGS TSSSSDQAGG GSGFLRFNIW EREPYMQPQQ AYQVNQMDRE PSIWASSFNE
401: GGGSFHQRHG GGGPS
001: MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
101: FNVEDWVHEE DIYDIGAYSE MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV HSPSSSSGGA AGVSDSSSFS
201: SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301: RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP
401: NIWTSSFNEG SGSFHQRHGG GGGSS
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.