Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU80800 | Sorghum | nucleus | 84.3 | 81.73 |
| Zm00001d052697_P002 | Maize | cytosol | 71.5 | 68.84 |
| Os08t0539300-01 | Rice | nucleus | 67.63 | 66.04 |
| TraesCS7B01G163800.1 | Wheat | cytosol | 68.12 | 65.58 |
| TraesCS7A01G268500.1 | Wheat | cytosol | 67.63 | 65.42 |
| TraesCS7D01G266300.1 | Wheat | cytosol | 67.63 | 65.12 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.78 | 32.95 |
| GSMUA_Achr8P17150_001 | Banana | cytosol, golgi, nucleus, plastid | 13.04 | 24.0 |
| Zm00001d009837_P001 | Maize | cytosol, nucleus, plasma membrane | 24.64 | 21.12 |
| GSMUA_Achr8P17170_001 | Banana | vacuole | 16.43 | 20.24 |
| Zm00001d040789_P001 | Maize | nucleus | 20.53 | 18.36 |
| Zm00001d037596_P001 | Maize | nucleus | 23.67 | 17.31 |
Protein Annotations
| EMBL:BT036889 | EnsemblPlants:Zm00001d031684_P001 | EnsemblPlants:Zm00001d031684_T001 | EnsemblPlantsGene:Zm00001d031684 | EntrezGene:100194362 | Gene3D:3.30.40.10 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF37 |
| PFAM:PF13639 | PFscan:PS50089 | ProteinID:ONM03468.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI00017B7294 | UniProt:B4FIF1 | MapMan:19.2.2.1.5.3.3 | : | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr1:+:198609064..198620174
Molecular Weight (calculated)
44527.0 Da
IEP (calculated)
7.393
GRAVY (calculated)
-0.430
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLERPPPAS AAEAAGAAAC SICLDPVLAC VAGRSVAKLQ CGHEFHLDCI GSAFNAKGAM QCPNCRKIEK GRWLYASGRH PPADIDMGGW VTSDNYDITS
101: ELPFGFQWCP FSGFTQLASM LGVREAEPTY HTTGDHSSAA SSSLVCPYLA LRGFLHPVNV PSTSNSGAES TSFHRHSTGL EGHVTPDLNN APVFHATESR
201: NHDSEHRHLS NLPVSGTPEY SMTPFGIGVP RYDSGSQQGF RSYAHHHPLI HRLTPRSGSN LVAPLGSVPA VVAETRGHGH GAPGHMYQHS SVQGSPFPPT
301: TRRVRPRALT ITSFIAATSS AEIAGPLGHG FPAPGAVNRS VSDAEGIDRA YTWGREGYDL FPWTPAEWGT FNPMQNHAHG SFTRRPAGER MPQSRPENGY
401: QPPVPTSQRM PPFL
101: ELPFGFQWCP FSGFTQLASM LGVREAEPTY HTTGDHSSAA SSSLVCPYLA LRGFLHPVNV PSTSNSGAES TSFHRHSTGL EGHVTPDLNN APVFHATESR
201: NHDSEHRHLS NLPVSGTPEY SMTPFGIGVP RYDSGSQQGF RSYAHHHPLI HRLTPRSGSN LVAPLGSVPA VVAETRGHGH GAPGHMYQHS SVQGSPFPPT
301: TRRVRPRALT ITSFIAATSS AEIAGPLGHG FPAPGAVNRS VSDAEGIDRA YTWGREGYDL FPWTPAEWGT FNPMQNHAHG SFTRRPAGER MPQSRPENGY
401: QPPVPTSQRM PPFL
001: MAGAKDSGCD DDLRIAGGCD PGKRGNPEDS SSPVEVSCSI CLESVLDDGT RSKAKLQCGH QFHLDCIGSA FNMKGAMQCP NCRNVEKGQW LYANGSTRPF
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRLAS QTPYCSQLLA ECFTIFFWNW AL
101: PEFSMEDWIP EEDLYGLSYP EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR TSDNNSTDDH PWNSHSNDHF
201: HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH PFLFSHRLAS QTPYCSQLLA ECFTIFFWNW AL
Arabidopsis Description
RFI2E3 ubiquitin-protein ligase RFI2 [Source:UniProtKB/Swiss-Prot;Acc:O82239]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.