Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93159 | Canola | nucleus | 17.4 | 21.21 |
| CDX89655 | Canola | nucleus | 16.85 | 20.89 |
| Bra013110.1-P | Field mustard | nucleus | 16.57 | 20.27 |
| AT4G13490.1 | Thale cress | cytosol, nucleus, plastid | 11.05 | 17.7 |
| GSMUA_Achr2P02250_001 | Banana | nucleus | 12.43 | 15.15 |
| AT3G05545.1 | Thale cress | nucleus | 16.85 | 14.35 |
| AT2G47700.1 | Thale cress | nucleus | 13.81 | 13.97 |
| TraesCS1D01G103800.1 | Wheat | cytosol, nucleus, plasma membrane | 16.02 | 13.36 |
| TraesCS1B01G123100.1 | Wheat | cytosol, nucleus, plasma membrane | 16.02 | 13.36 |
| Os05t0154600-01 | Rice | nucleus | 15.75 | 13.07 |
| EES19051 | Sorghum | nucleus | 15.75 | 13.04 |
| Os01t0350900-02 | Rice | cytosol, nucleus, plasma membrane | 15.47 | 12.31 |
| Zm00001d009837_P001 | Maize | cytosol, nucleus, plasma membrane | 15.75 | 11.8 |
| GSMUA_Achr5P27050_001 | Banana | nucleus | 13.26 | 11.54 |
| TraesCS1A01G095100.1 | Wheat | cytosol | 12.43 | 11.51 |
| HORVU1Hr1G022130.3 | Barley | nucleus, plastid | 16.85 | 11.23 |
| Zm00001d040789_P001 | Maize | nucleus | 13.81 | 10.8 |
| GSMUA_Achr8P06630_001 | Banana | nucleus | 15.19 | 10.32 |
| KXG32474 | Sorghum | nucleus | 12.98 | 10.28 |
| Zm00001d037596_P001 | Maize | nucleus | 15.47 | 9.89 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | EntrezGene:816015 | ProteinID:AAD26908.1 | ProteinID:AEC06379.1 | ArrayExpress:AT2G15260 |
| EnsemblPlantsGene:AT2G15260 | RefSeq:AT2G15260 | TAIR:AT2G15260 | RefSeq:AT2G15260-TAIR-G | EnsemblPlants:AT2G15260.1 | TAIR:AT2G15260.1 |
| Unigene:At.52748 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_179128.1 | PFAM:PF13639 | PFscan:PS50089 |
| PANTHER:PTHR22937 | PANTHER:PTHR22937:SF6 | UniProt:Q9SHV0 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00000AA7AF |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SHV0]
Coordinates
chr2:+:6630528..6634008
Molecular Weight (calculated)
40383.5 Da
IEP (calculated)
4.618
GRAVY (calculated)
-0.721
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MARTIKYRLL IEFHRVNKQV ERIYSKSSGS SNVNEGKRFA FDLNVEPVDE TLDLNVEPVD EENRDALNPV DEENHDSMNH VAKQNHDSSN HVDQEIRDSQ
101: NLIDEENHDS PKDSDYLGDL DLCSICRGAL VNENDVQRTL VTLKCVHKFH LDCIGSAYNA KGFMECPNCR NIEPGHWQFS DGTHFNPNGM IANNEEEEED
201: NDPGSFSQMI VKSEVCPFGC LGQRYPFDPL GRSDISMINA PMNLSCPSTS TVQLNPSDVW ESTQPFLSSR HHLMVEDEIY RMIYGDRIEM GERSGNHRGR
301: ESNGNGDNGG SSTFGGNGNG NGINATVLCS SRTGSSNYFS TSQVKVTIQR LENVHGLIGI SS
101: NLIDEENHDS PKDSDYLGDL DLCSICRGAL VNENDVQRTL VTLKCVHKFH LDCIGSAYNA KGFMECPNCR NIEPGHWQFS DGTHFNPNGM IANNEEEEED
201: NDPGSFSQMI VKSEVCPFGC LGQRYPFDPL GRSDISMINA PMNLSCPSTS TVQLNPSDVW ESTQPFLSSR HHLMVEDEIY RMIYGDRIEM GERSGNHRGR
301: ESNGNGDNGG SSTFGGNGNG NGINATVLCS SRTGSSNYFS TSQVKVTIQR LENVHGLIGI SS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.