Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G066070.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G08690.1 | HORVU4Hr1G066070.1 | AT3G49810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G002220.2 | Barley | cytosol, nucleus, peroxisome | 97.35 | 99.32 |
| EES19701 | Sorghum | cytosol | 96.03 | 97.97 |
| AT3G08690.1 | Thale cress | cytosol | 92.72 | 94.59 |
| Os01t0819400-00 | Rice | cytosol | 98.68 | 94.3 |
| Bra001347.1-P | Field mustard | cytosol | 92.05 | 93.92 |
| Bra041101.1-P | Field mustard | cytosol | 91.39 | 93.24 |
| HORVU7Hr1G080800.2 | Barley | cytosol, nucleus, peroxisome | 90.73 | 92.57 |
| HORVU3Hr1G059290.1 | Barley | cytosol | 88.74 | 91.16 |
| HORVU2Hr1G118240.5 | Barley | cytosol | 76.82 | 90.62 |
| Zm00001d010618_P003 | Maize | cytosol | 96.69 | 89.57 |
| HORVU5Hr1G053810.1 | Barley | cytosol | 84.11 | 85.81 |
| HORVU1Hr1G069530.1 | Barley | cytosol, plastid | 98.68 | 69.95 |
| HORVU1Hr1G086460.1 | Barley | endoplasmic reticulum, extracellular | 30.46 | 48.42 |
| HORVU5Hr1G055360.2 | Barley | cytosol, mitochondrion | 47.02 | 45.81 |
| Bra029711.1-P | Field mustard | nucleus | 90.07 | 43.87 |
| GSMUA_Achr5P04210_001 | Banana | cytosol | 47.68 | 42.6 |
| HORVU1Hr1G086610.1 | Barley | cytosol, plastid | 46.36 | 40.23 |
| HORVU1Hr1G086480.1 | Barley | mitochondrion | 46.36 | 36.46 |
| HORVU3Hr1G061790.1 | Barley | cytosol | 47.68 | 35.47 |
| HORVU3Hr1G020470.1 | Barley | plastid | 42.38 | 28.19 |
| HORVU1Hr1G027600.1 | Barley | plastid | 41.06 | 26.27 |
Protein Annotations
| MapMan:19.2.2.5.2 | Gene3D:3.10.110.10 | UniProt:A0A287LWG0 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016740 | EnsemblPlantsGene:HORVU3Hr1G080790 | EnsemblPlants:HORVU3Hr1G080790.2 | InterPro:IPR000608 |
| InterPro:IPR016135 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR24068 | PANTHER:PTHR24068:SF55 |
| SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI000B473265 |
Description
No Description!
Coordinates
chrchr3H:-:590763879..590766899
Molecular Weight (calculated)
16879.3 Da
IEP (calculated)
7.502
GRAVY (calculated)
-0.354
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: ELIMASKRIL KELKDLQKDP PTSCSAGPSG EDMFHWQATI MGPPDSPYAG GVFLVNIHFP PDYPFKPPKV SFKTKVFHPN INSNGSICLD ILKEQWSPAL
101: TISKVLLSIC SLLTDPNPDD PLVPEIAHMY KTDRSKYETT ARSWTQKYAM G
101: TISKVLLSIC SLLTDPNPDD PLVPEIAHMY KTDRSKYETT ARSWTQKYAM G
001: MASKRILKEL KDLQKDPPSN CSAGPVAEDM FHWQATIMGP PESPYAGGVF LVSIHFPPDY PFKPPKVSFK TKVYHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RSKYESTARS WTQKYAMG
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RSKYESTARS WTQKYAMG
Arabidopsis Description
UBC11Ubiquitin-conjugating enzyme E2 11 [Source:UniProtKB/Swiss-Prot;Acc:P35134]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.