Factsheet for Bra029711.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
vacuole 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027467.1-P
Bra029975.1-P
Bra033652.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08690.1	Bra029975.1-P	AT3G49810.1	21798944
AT3G08690.1	Bra027467.1-P	AT5G42940.1	21798944
AT3G08690.1	Bra033652.1-P	AT5G42940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001347.1-P	Field mustard	cytosol	46.77	97.97
Bra041101.1-P	Field mustard	cytosol	46.45	97.3
AT3G08690.1	Thale cress	cytosol	45.81	95.95
TraesCS1A01G301600.1	Wheat	cytosol, nucleus, peroxisome	43.87	91.89
Bra029076.1-P	Field mustard	cytosol	43.87	91.89
EES19701	Sorghum	cytosol	43.87	91.89
HORVU0Hr1G002220.2	Barley	cytosol, nucleus, peroxisome	43.87	91.89
Bra022645.1-P	Field mustard	cytosol	43.87	91.89
TraesCS1B01G311400.1	Wheat	cytosol, nucleus, peroxisome	43.87	91.89
TraesCS1D01G301300.1	Wheat	cytosol, nucleus, peroxisome	43.87	91.89
TraesCS3A01G342500.1	Wheat	cytosol, nucleus, peroxisome	43.87	91.89
TraesCS3B01G374500.1	Wheat	cytosol, nucleus, peroxisome	43.87	91.89
TraesCS3D01G336300.1	Wheat	cytosol, nucleus, peroxisome	43.87	91.89
Bra003066.1-P	Field mustard	cytosol	43.87	91.89
HORVU3Hr1G080790.2	Barley	cytosol	43.87	90.07
Bra027688.1-P	Field mustard	cytosol	31.61	88.29
Bra028946.1-P	Field mustard	cytosol	39.68	87.86
Bra035605.1-P	Field mustard	cytosol	41.94	87.84
Os01t0819400-00	Rice	cytosol	43.55	85.44
Bra002842.1-P	Field mustard	cytosol	40.0	83.78
Zm00001d010618_P003	Maize	cytosol	43.87	83.44
Bra013049.1-P	Field mustard	cytosol	37.1	77.7
Bra027749.1-P	Field mustard	nucleus	37.74	76.97
Bra001995.1-P	Field mustard	cytosol	38.71	66.67
HORVU1Hr1G069530.1	Barley	cytosol, plastid	43.87	63.85
Bra032244.1-P	Field mustard	cytosol	25.16	52.0
Bra026018.1-P	Field mustard	cytosol	22.58	45.75
Bra026700.1-P	Field mustard	cytosol	22.58	45.75
Bra016626.1-P	Field mustard	cytosol	22.26	45.1
Bra008383.1-P	Field mustard	cytosol	22.26	45.1
Bra026222.1-P	Field mustard	mitochondrion, nucleus	21.61	44.08
Bra017410.1-P	Field mustard	mitochondrion, nucleus	21.61	44.08
Bra026833.1-P	Field mustard	mitochondrion, nucleus	21.61	44.08
Bra029252.1-P	Field mustard	mitochondrion, nucleus	21.29	44.0
Bra035071.1-P	Field mustard	cytosol	19.68	43.88
Bra026582.1-P	Field mustard	mitochondrion, nucleus	21.29	43.42
Bra024808.1-P	Field mustard	mitochondrion, nucleus	21.29	43.42
Bra016264.1-P	Field mustard	mitochondrion	20.32	41.45
GSMUA_Achr5P04210_001	Banana	cytosol	22.58	41.42
Bra016704.1-P	Field mustard	nucleus	20.0	40.79
Bra027422.1-P	Field mustard	plastid	22.58	38.25
Bra016703.1-P	Field mustard	nucleus	21.61	31.9

Protein Annotations

MapMan:10.6.1	MapMan:19.2.2.5.2	Gene3D:3.10.110.10	Gene3D:3.40.30.10	EnsemblPlantsGene:Bra029711	EnsemblPlants:Bra029711.1
EnsemblPlants:Bra029711.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0016740	GO:GO:0019725
GO:GO:0045454	InterPro:IPR000608	InterPro:IPR013766	InterPro:IPR016135	UniProt:M4ELP2	PFAM:PF00085
PFAM:PF00179	ScanProsite:PS00183	ScanProsite:PS00194	PFscan:PS50127	PFscan:PS51352	PANTHER:PTHR24068
PANTHER:PTHR24068:SF55	SMART:SM00212	SUPFAM:SSF52833	SUPFAM:SSF54495	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002547CFE	:

Description

AT3G08690 (E=2e-081) UBC11, ATUBC11 | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase

Coordinates

chrA05:-:22557447..22560594

Molecular Weight (calculated)

34679.4 Da

IEP (calculated)

6.625

GRAVY (calculated)

-0.336

Length

310 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPSN CSAGPVAEDM FHWQATIMGP PDSPYAGGVF LVSIHFPPDY PFKPPKVSFK TRVYHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KSKYESTARS WTQNNRIFAK KIKKEESVYS VFKIYREFIQ MGSCVSKDTG DDDSVHNVDF SGGNVHLITT
201: KESWDEKLAE AGRDGKIVIA NFSATWCGPC KIVAPFYVEL SEKHPSLMFL LVDVDELSDF SSTWDIKATP TFFFLKNGEQ IGKLVGANKP ELQKKVTSII
301: DSVPESPQRP

Best Arabidopsis Sequence Match ( AT3G08690.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPSN CSAGPVAEDM FHWQATIMGP PESPYAGGVF LVSIHFPPDY PFKPPKVSFK TKVYHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RSKYESTARS WTQKYAMG

Arabidopsis Description

UBC11Ubiquitin-conjugating enzyme E2 11 [Source:UniProtKB/Swiss-Prot;Acc:P35134]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.