Factsheet for GSMUA_Achr5P04210_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P08620_001
GSMUA_Achr3P25750_001
GSMUA_Achr4P07400_001
GSMUA_Achr8P04940_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08690.1	GSMUA_Achr2P08620_001	AT3G49810.1	21798944
AT3G08690.1	GSMUA_Achr3P25750_001	AT3G49810.1	21798944
AT3G08690.1	GSMUA_Achr4P07400_001	AT3G49810.1	21798944
AT3G08690.1	GSMUA_Achr8P04940_001	AT3G49810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P11950_001	Banana	cytosol	40.24	53.54
GSMUA_Achr9P12740_001	Banana	cytosol, nucleus, peroxisome	44.97	51.35
GSMUA_Achr6P36250_001	Banana	nucleus	43.79	50.0
GSMUA_Achr9P05290_001	Banana	cytosol	42.6	48.65
HORVU0Hr1G002220.2	Barley	cytosol, nucleus, peroxisome	42.6	48.65
TraesCS1A01G301600.1	Wheat	cytosol, nucleus, peroxisome	42.6	48.65
TraesCS1B01G311400.1	Wheat	cytosol, nucleus, peroxisome	42.6	48.65
TraesCS1D01G301300.1	Wheat	cytosol, nucleus, peroxisome	42.6	48.65
TraesCS3A01G342500.1	Wheat	cytosol, nucleus, peroxisome	42.6	48.65
TraesCS3B01G374500.1	Wheat	cytosol, nucleus, peroxisome	42.6	48.65
EES01663	Sorghum	cytosol, nucleus, peroxisome	42.6	48.65
TraesCS3D01G336300.1	Wheat	cytosol, nucleus, peroxisome	42.6	48.65
GSMUA_Achr10P...	Banana	cytosol	42.01	47.97
GSMUA_Achr4P02490_001	Banana	cytosol	42.01	47.97
GSMUA_Achr7P24690_001	Banana	cytosol	42.01	47.97
GSMUA_Achr4P15590_001	Banana	cytosol	42.01	47.97
GSMUA_Achr4P19400_001	Banana	cytosol	42.01	47.97
HORVU3Hr1G080790.2	Barley	cytosol	42.6	47.68
GSMUA_Achr8P27940_001	Banana	cytosol	41.42	47.3
Bra001347.1-P	Field mustard	cytosol	41.42	47.3
GSMUA_Achr3P15810_001	Banana	cytosol	41.42	47.3
Bra041101.1-P	Field mustard	cytosol	41.42	47.3
GSMUA_Achr6P05720_001	Banana	cytosol	40.83	46.62
AT3G08690.1	Thale cress	cytosol	40.83	46.62
Os01t0819400-00	Rice	cytosol	42.6	45.57
GSMUA_Achr3P26650_001	Banana	cytosol, mitochondrion, peroxisome	39.65	45.27
GSMUA_Achr9P12710_001	Banana	cytosol	39.05	44.59
GSMUA_Achr1P16460_001	Banana	cytosol, nucleus, vacuole	23.67	44.44
GSMUA_Achr7P17820_001	Banana	cytosol	38.46	43.92
Zm00001d011500_P014	Maize	cytosol	42.01	43.83
GSMUA_Achr4P10380_001	Banana	cytosol	42.6	42.11
GSMUA_Achr4P08430_001	Banana	mitochondrion	42.6	40.45
GSMUA_Achr9P28860_001	Banana	cytosol	24.26	36.94
GSMUA_Achr4P31050_001	Banana	cytosol	15.98	35.53
HORVU1Hr1G069530.1	Barley	cytosol, plastid	44.38	35.21
GSMUA_Achr9P27870_001	Banana	cytosol	23.08	35.14
GSMUA_Achr5P22400_001	Banana	cytosol, nucleus, peroxisome	43.2	34.76
GSMUA_Achr6P32020_001	Banana	mitochondrion, plastid	44.97	31.67
GSMUA_Achr4P22180_001	Banana	cytosol	23.08	28.06
GSMUA_Achr9P25840_001	Banana	mitochondrion, nucleus	24.26	26.97
GSMUA_Achr6P04830_001	Banana	cytosol, nucleus, plastid	22.49	26.57
GSMUA_Achr6P00800_001	Banana	nucleus	22.49	26.57
GSMUA_Achr2P17510_001	Banana	nucleus	22.49	26.21
GSMUA_Achr1P27440_001	Banana	cytosol	21.89	24.18
GSMUA_Achr6P26870_001	Banana	cytosol	21.3	23.53
GSMUA_Achr1P04790_001	Banana	cytosol	21.3	23.53
GSMUA_Achr2P16860_001	Banana	endoplasmic reticulum, golgi	26.63	23.2
Bra029711.1-P	Field mustard	nucleus	41.42	22.58
GSMUA_Achr9P06450_001	Banana	cytosol	21.3	20.81
GSMUA_Achr4P31060_001	Banana	cytosol, extracellular	4.73	9.76

Protein Annotations

EnsemblPlants:GSMUA_Achr5P04210_001	EnsemblPlants:GSMUA_Achr5T04210_001	EnsemblPlantsGene:GSMUA_Achr5G04210_001	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR24068	PANTHER:PTHR24068:SF117	PFAM:PF00179	PFscan:PS50127
SMART:SM00212	SUPFAM:SSF54495	UniParc:UPI0002953F65	UniProt:M0SVK0	MapMan:35.1	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G04210_001]

Coordinates

chr5:-:3031602..3039535

Molecular Weight (calculated)

18786.4 Da

IEP (calculated)

8.502

GRAVY (calculated)

-0.402

Length

169 amino acids

Sequence
(BLAST)

001: MMRSSCATSR VNSDGAISTS PEYGELARSK REGSLHRWQP PNPSARASGS RPLRCFRVEK LDWSLMATKR IQKELKDLES DPSVACSTGP VGEDMFHWQA
101: TITGPADSPF LGGIFLVNIH FPPDYPFKPP KVTIFLLSQD VFHPNINSNR SICLDILKEQ GSPALQCLR

Best Arabidopsis Sequence Match ( AT4G27960.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTART WTQKYAMG

Arabidopsis Description

UBC9Ubiquitin conjugating enzyme 9 [Source:UniProtKB/TrEMBL;Acc:F4JKF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.