Factsheet for GSMUA_Achr2P16860_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 6
cytosol 2
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	cytosol, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37384	Sorghum	mitochondrion, nucleus	77.32	98.68
GSMUA_Achr6P00800_001	Banana	nucleus	72.68	98.6
GSMUA_Achr6P04830_001	Banana	cytosol, nucleus, plastid	71.65	97.2
GSMUA_Achr9P25840_001	Banana	mitochondrion, nucleus	75.77	96.71
GSMUA_Achr2P17510_001	Banana	nucleus	71.13	95.17
Zm00001d013092_P002	Maize	mitochondrion	77.32	86.21
Zm00001d036054_P001	Maize	cytosol, nucleus, plastid	76.29	83.15
KXG31665	Sorghum	cytosol	76.29	83.15
GSMUA_Achr9P28860_001	Banana	cytosol	25.77	45.05
GSMUA_Achr9P27870_001	Banana	cytosol	25.26	44.14
GSMUA_Achr6P36250_001	Banana	nucleus	33.51	43.92
GSMUA_Achr10P...	Banana	cytosol	33.51	43.92
GSMUA_Achr7P24690_001	Banana	cytosol	33.51	43.92
GSMUA_Achr4P02490_001	Banana	cytosol	33.51	43.92
GSMUA_Achr3P15810_001	Banana	cytosol	33.51	43.92
GSMUA_Achr4P15590_001	Banana	cytosol	33.51	43.92
GSMUA_Achr8P27940_001	Banana	cytosol	32.99	43.24
GSMUA_Achr9P05290_001	Banana	cytosol	32.99	43.24
GSMUA_Achr7P17820_001	Banana	cytosol	32.47	42.57
GSMUA_Achr4P19400_001	Banana	cytosol	32.47	42.57
GSMUA_Achr9P12710_001	Banana	cytosol	32.47	42.57
GSMUA_Achr6P05720_001	Banana	cytosol	31.96	41.89
GSMUA_Achr9P12740_001	Banana	cytosol, nucleus, peroxisome	31.96	41.89
GSMUA_Achr3P26650_001	Banana	cytosol, mitochondrion, peroxisome	31.44	41.22
GSMUA_Achr1P16460_001	Banana	cytosol, nucleus, vacuole	19.07	41.11
GSMUA_Achr1P27440_001	Banana	cytosol	30.41	38.56
GSMUA_Achr4P10380_001	Banana	cytosol	33.51	38.01
GSMUA_Achr1P04790_001	Banana	cytosol	29.9	37.91
GSMUA_Achr3P11950_001	Banana	cytosol	24.74	37.8
GSMUA_Achr4P31050_001	Banana	cytosol	14.43	36.84
GSMUA_Achr4P08430_001	Banana	mitochondrion	33.51	36.52
GSMUA_Achr6P26870_001	Banana	cytosol	27.84	35.29
GSMUA_Achr9P06450_001	Banana	cytosol	29.9	33.53
GSMUA_Achr4P22180_001	Banana	cytosol	23.2	32.37
GSMUA_Achr5P22400_001	Banana	cytosol, nucleus, peroxisome	33.51	30.95
GSMUA_Achr4P31060_001	Banana	cytosol, extracellular	12.37	29.27
GSMUA_Achr6P32020_001	Banana	mitochondrion, plastid	33.51	27.08
GSMUA_Achr5P04210_001	Banana	cytosol	23.2	26.63

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr2G16860_001	EnsemblPlants:GSMUA_Achr2P16860_001	EnsemblPlants:GSMUA_Achr2T16860_001
InterPro:IPR000608	InterPro:IPR016135	UniProt:M0S8M7	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR43898	PANTHER:PTHR43898:SF2	SMART:SM00212	SUPFAM:SSF54495	SignalP:SignalP-noTM	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000296AF87	:	:	:

Description

Ubiquitin-conjugating enzyme E2 2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G16860_001]

Coordinates

chr2:-:17616047..17623259

Molecular Weight (calculated)

21939.3 Da

IEP (calculated)

9.171

GRAVY (calculated)

-0.319

Length

194 amino acids

Sequence
(BLAST)

001: MNRANSSLFV AIRLFILLFV TGRLRPERIP SLAVAAGSQV ARMSTPARKR LMRDFKRLQQ DPPAGISGAP HDNNIMLWNA VIFGPDDTPW DGGTFKLTLQ
101: FTEDYPNKPP TVRFVSRMFH PNIYADGSIC LDILQNQWSP IYDVAAILTS IQSLLCDPNP NSPANSEAAR MFSENKREYN RKLREIVEQS WTAD

Best Arabidopsis Sequence Match ( AT2G02760.3 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SESKREYNRR VREVVEQSWT AD

Arabidopsis Description

UBC2UBC2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0U6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.