Factsheet for GSMUA_Achr4P08430_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
vacuole 1
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	82.02	98.65
GSMUA_Achr7P24690_001	Banana	cytosol	82.02	98.65
GSMUA_Achr4P15590_001	Banana	cytosol	82.02	98.65
GSMUA_Achr4P02490_001	Banana	cytosol	80.9	97.3
GSMUA_Achr6P05720_001	Banana	cytosol	79.78	95.95
GSMUA_Achr8P27940_001	Banana	cytosol	79.21	95.27
GSMUA_Achr9P05290_001	Banana	cytosol	79.21	95.27
GSMUA_Achr9P28860_001	Banana	cytosol	58.99	94.59
GSMUA_Achr3P15810_001	Banana	cytosol	78.65	94.59
GSMUA_Achr4P19400_001	Banana	cytosol	76.97	92.57
GSMUA_Achr9P12740_001	Banana	cytosol, nucleus, peroxisome	76.97	92.57
GSMUA_Achr6P36250_001	Banana	nucleus	76.4	91.89
GSMUA_Achr3P26650_001	Banana	cytosol, mitochondrion, peroxisome	74.16	89.19
GSMUA_Achr4P10380_001	Banana	cytosol	84.27	87.72
GSMUA_Achr9P27870_001	Banana	cytosol	53.93	86.49
GSMUA_Achr7P17820_001	Banana	cytosol	71.91	86.49
GSMUA_Achr1P16460_001	Banana	cytosol, nucleus, vacuole	43.26	85.56
GSMUA_Achr3P11950_001	Banana	cytosol	60.67	85.04
GSMUA_Achr9P12710_001	Banana	cytosol	70.22	84.46
GSMUA_Achr5P22400_001	Banana	cytosol, nucleus, peroxisome	75.84	64.29
GSMUA_Achr6P32020_001	Banana	mitochondrion, plastid	85.39	63.33
GSMUA_Achr4P22180_001	Banana	cytosol	39.33	50.36
GSMUA_Achr4P31060_001	Banana	cytosol, extracellular	23.03	50.0
GSMUA_Achr1P27440_001	Banana	cytosol	41.01	47.71
GSMUA_Achr1P04790_001	Banana	cytosol	41.01	47.71
GSMUA_Achr6P26870_001	Banana	cytosol	39.89	46.41
GSMUA_Achr6P00800_001	Banana	nucleus	35.96	44.76
GSMUA_Achr6P04830_001	Banana	cytosol, nucleus, plastid	34.83	43.36
GSMUA_Achr9P25840_001	Banana	mitochondrion, nucleus	36.52	42.76
GSMUA_Achr2P17510_001	Banana	nucleus	34.83	42.76
GSMUA_Achr5P04210_001	Banana	cytosol	40.45	42.6
GSMUA_Achr9P06450_001	Banana	cytosol	41.01	42.2
GSMUA_Achr4P31050_001	Banana	cytosol	15.73	36.84
GSMUA_Achr2P16860_001	Banana	endoplasmic reticulum, golgi	36.52	33.51

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr4G08430_001	EnsemblPlants:GSMUA_Achr4P08430_001	EnsemblPlants:GSMUA_Achr4T08430_001	InterPro:IPR000608
InterPro:IPR016135	UniProt:M0SM60	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF68	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI000295F963	SEG:seg	:	:	:	:

Description

Ubiquitin-conjugating enzyme E2 28 [Source:GMGC_GENE;Acc:GSMUA_Achr4G08430_001]

Coordinates

chr4:+:6199572..6204214

Molecular Weight (calculated)

19863.1 Da

IEP (calculated)

9.876

GRAVY (calculated)

-0.307

Length

178 amino acids

Sequence
(BLAST)

001: MAGFGAFIFE VGGRNPRLPR RIRTRTRSSA MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP PDSPYAGGVF LVTIHFPPDY PFKPPKVAFR
101: TKVFHPNINS NGSICLDILK EQWSPALTIS KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYEATARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.