Factsheet for GSMUA_Achr4P10380_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	85.38	98.65
GSMUA_Achr7P24690_001	Banana	cytosol	85.38	98.65
GSMUA_Achr4P15590_001	Banana	cytosol	85.38	98.65
GSMUA_Achr4P02490_001	Banana	cytosol	84.21	97.3
GSMUA_Achr6P05720_001	Banana	cytosol	83.04	95.95
GSMUA_Achr8P27940_001	Banana	cytosol	82.46	95.27
GSMUA_Achr9P05290_001	Banana	cytosol	82.46	95.27
GSMUA_Achr9P28860_001	Banana	cytosol	61.4	94.59
GSMUA_Achr3P15810_001	Banana	cytosol	81.87	94.59
GSMUA_Achr4P19400_001	Banana	cytosol	80.12	92.57
GSMUA_Achr9P12740_001	Banana	cytosol, nucleus, peroxisome	80.12	92.57
GSMUA_Achr6P36250_001	Banana	nucleus	79.53	91.89
GSMUA_Achr3P26650_001	Banana	cytosol, mitochondrion, peroxisome	77.19	89.19
GSMUA_Achr9P27870_001	Banana	cytosol	56.14	86.49
GSMUA_Achr7P17820_001	Banana	cytosol	74.85	86.49
GSMUA_Achr1P16460_001	Banana	cytosol, nucleus, vacuole	45.03	85.56
GSMUA_Achr3P11950_001	Banana	cytosol	63.16	85.04
GSMUA_Achr9P12710_001	Banana	cytosol	73.1	84.46
GSMUA_Achr4P08430_001	Banana	mitochondrion	87.72	84.27
GSMUA_Achr5P22400_001	Banana	cytosol, nucleus, peroxisome	78.95	64.29
GSMUA_Achr6P32020_001	Banana	mitochondrion, plastid	87.72	62.5
GSMUA_Achr4P22180_001	Banana	cytosol	40.94	50.36
GSMUA_Achr4P31060_001	Banana	cytosol, extracellular	23.98	50.0
GSMUA_Achr1P27440_001	Banana	cytosol	42.69	47.71
GSMUA_Achr1P04790_001	Banana	cytosol	42.69	47.71
GSMUA_Achr6P26870_001	Banana	cytosol	41.52	46.41
GSMUA_Achr6P00800_001	Banana	nucleus	37.43	44.76
GSMUA_Achr6P04830_001	Banana	cytosol, nucleus, plastid	36.26	43.36
GSMUA_Achr9P25840_001	Banana	mitochondrion, nucleus	38.01	42.76
GSMUA_Achr2P17510_001	Banana	nucleus	36.26	42.76
GSMUA_Achr5P04210_001	Banana	cytosol	42.11	42.6
GSMUA_Achr9P06450_001	Banana	cytosol	42.69	42.2
GSMUA_Achr4P31050_001	Banana	cytosol	16.37	36.84
GSMUA_Achr2P16860_001	Banana	endoplasmic reticulum, golgi	38.01	33.51

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr4G10380_001	EnsemblPlants:GSMUA_Achr4P10380_001	EnsemblPlants:GSMUA_Achr4T10380_001	InterPro:IPR000608
InterPro:IPR016135	UniProt:M0SMQ5	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF68	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI000295F3EC	:	:	:	:	:

Description

Ubiquitin-conjugating enzyme E2 28 [Source:GMGC_GENE;Acc:GSMUA_Achr4G10380_001]

Coordinates

chr4:-:7521535..7526179

Molecular Weight (calculated)

18995.9 Da

IEP (calculated)

8.069

GRAVY (calculated)

-0.353

Length

171 amino acids

Sequence
(BLAST)

001: MPELREGRRG IQESVADVRG PSAMASKRIL KELKDLQKDP PTSCSAGPVA EDMFHWQATI MGPPDSPYAG GVFLVTIHFP PDYPFKPPKV AFRTKVFHPN
101: INSNGSICLD ILKEQWSPAL TISKVLLSIC SLLTDPNPDD PLVPEIAHMY KTDRAKYEAT ARSWTQKYAM G

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.