Factsheet for GSMUA_Achr6P00800_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P04830_001	Banana	cytosol, nucleus, plastid	97.2	97.2
GSMUA_Achr2P17510_001	Banana	nucleus	96.5	95.17
TraesCS2D01G248000.1	Wheat	nucleus	98.6	92.76
TraesCS2B01G270000.2	Wheat	nucleus	98.6	92.76
TraesCS2A01G247700.1	Wheat	nucleus	98.6	92.76
PGSC0003DMT400046771	Potato	mitochondrion, nucleus	97.2	91.45
GSMUA_Achr9P25840_001	Banana	mitochondrion, nucleus	96.5	90.79
GSMUA_Achr2P16860_001	Banana	endoplasmic reticulum, golgi	98.6	72.68
GSMUA_Achr9P28860_001	Banana	cytosol	35.66	45.95
GSMUA_Achr9P27870_001	Banana	cytosol	34.97	45.05
GSMUA_Achr3P15810_001	Banana	cytosol	45.45	43.92
GSMUA_Achr10P...	Banana	cytosol	44.76	43.24
GSMUA_Achr4P02490_001	Banana	cytosol	44.76	43.24
GSMUA_Achr4P15590_001	Banana	cytosol	44.76	43.24
GSMUA_Achr9P05290_001	Banana	cytosol	44.76	43.24
GSMUA_Achr8P27940_001	Banana	cytosol	44.76	43.24
GSMUA_Achr7P24690_001	Banana	cytosol	44.76	43.24
GSMUA_Achr6P36250_001	Banana	nucleus	44.76	43.24
GSMUA_Achr9P12710_001	Banana	cytosol	44.06	42.57
GSMUA_Achr7P17820_001	Banana	cytosol	44.06	42.57
GSMUA_Achr4P19400_001	Banana	cytosol	44.06	42.57
GSMUA_Achr6P05720_001	Banana	cytosol	42.66	41.22
GSMUA_Achr9P12740_001	Banana	cytosol, nucleus, peroxisome	42.66	41.22
GSMUA_Achr3P26650_001	Banana	cytosol, mitochondrion, peroxisome	42.66	41.22
GSMUA_Achr1P16460_001	Banana	cytosol, nucleus, vacuole	25.87	41.11
GSMUA_Achr4P10380_001	Banana	cytosol	44.76	37.43
GSMUA_Achr1P27440_001	Banana	cytosol	39.86	37.25
GSMUA_Achr1P04790_001	Banana	cytosol	39.16	36.6
GSMUA_Achr3P11950_001	Banana	cytosol	32.17	36.22
GSMUA_Achr4P08430_001	Banana	mitochondrion	44.76	35.96
GSMUA_Achr6P26870_001	Banana	cytosol	36.36	33.99
GSMUA_Achr4P22180_001	Banana	cytosol	32.17	33.09
GSMUA_Achr4P31050_001	Banana	cytosol	17.48	32.89
GSMUA_Achr9P06450_001	Banana	cytosol	39.16	32.37
GSMUA_Achr4P31060_001	Banana	cytosol, extracellular	17.48	30.49
GSMUA_Achr5P22400_001	Banana	cytosol, nucleus, peroxisome	44.76	30.48
GSMUA_Achr6P32020_001	Banana	mitochondrion, plastid	44.76	26.67
GSMUA_Achr5P04210_001	Banana	cytosol	26.57	22.49

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr6G00800_001	EnsemblPlants:GSMUA_Achr6P00800_001	EnsemblPlants:GSMUA_Achr6T00800_001	InterPro:IPR000608
InterPro:IPR016135	UniProt:M0T328	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43898
PANTHER:PTHR43898:SF2	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI000294FFA2	:	:	:	:	:

Description

Ubiquitin-conjugating enzyme E2 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G00800_001]

Coordinates

chr6:+:543396..550644

Molecular Weight (calculated)

16275.1 Da

IEP (calculated)

4.681

GRAVY (calculated)

-0.549

Length

143 amino acids

Sequence
(BLAST)

001: MRDFKRLQQD PPAGISGAPH DNNIMLWNAV IFGPDDTPWD GGTFKLTLQF TEDYPNKPPT VRFVSRMFHP NIYADGSICL DILQNQWSPI YDVAAVLTSI
101: QSLLCDPNPN SPANSEAARM FSENKREYNR KVREIVEQSW TAD

Best Arabidopsis Sequence Match ( AT2G02760.3 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SESKREYNRR VREVVEQSWT AD

Arabidopsis Description

UBC2UBC2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0U6]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.