Factsheet for GSMUA_Achr1P04790_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P27440_001	Banana	cytosol	98.69	98.69
GSMUA_Achr4P31050_001	Banana	cytosol	45.1	90.79
GSMUA_Achr6P26870_001	Banana	cytosol	89.54	89.54
GSMUA_Achr9P06450_001	Banana	cytosol	98.69	87.28
GSMUA_Achr4P31060_001	Banana	cytosol, extracellular	43.79	81.71
VIT_12s0028g02220.t01	Wine grape	extracellular	97.39	80.98
GSMUA_Achr9P27870_001	Banana	cytosol	41.83	57.66
GSMUA_Achr9P28860_001	Banana	cytosol	39.87	54.95
GSMUA_Achr1P16460_001	Banana	cytosol, nucleus, vacuole	32.03	54.44
GSMUA_Achr3P26650_001	Banana	cytosol, mitochondrion, peroxisome	49.02	50.68
GSMUA_Achr9P05290_001	Banana	cytosol	49.02	50.68
GSMUA_Achr8P27940_001	Banana	cytosol	49.02	50.68
GSMUA_Achr3P15810_001	Banana	cytosol	49.02	50.68
GSMUA_Achr4P15590_001	Banana	cytosol	48.37	50.0
GSMUA_Achr4P19400_001	Banana	cytosol	48.37	50.0
GSMUA_Achr9P12710_001	Banana	cytosol	48.37	50.0
GSMUA_Achr9P12740_001	Banana	cytosol, nucleus, peroxisome	47.71	49.32
GSMUA_Achr6P05720_001	Banana	cytosol	47.06	48.65
GSMUA_Achr7P24690_001	Banana	cytosol	47.06	48.65
GSMUA_Achr7P17820_001	Banana	cytosol	47.06	48.65
GSMUA_Achr10P...	Banana	cytosol	46.41	47.97
GSMUA_Achr6P36250_001	Banana	nucleus	46.41	47.97
GSMUA_Achr4P02490_001	Banana	cytosol	45.75	47.3
GSMUA_Achr3P11950_001	Banana	cytosol	37.91	45.67
GSMUA_Achr4P10380_001	Banana	cytosol	47.71	42.69
GSMUA_Achr4P22180_001	Banana	cytosol	38.56	42.45
GSMUA_Achr4P08430_001	Banana	mitochondrion	47.71	41.01
GSMUA_Achr2P17510_001	Banana	nucleus	37.25	39.31
GSMUA_Achr6P04830_001	Banana	cytosol, nucleus, plastid	36.6	39.16
GSMUA_Achr6P00800_001	Banana	nucleus	36.6	39.16
GSMUA_Achr9P25840_001	Banana	mitochondrion, nucleus	36.6	36.84
GSMUA_Achr5P22400_001	Banana	cytosol, nucleus, peroxisome	46.41	33.81
GSMUA_Achr6P32020_001	Banana	mitochondrion, plastid	49.02	31.25
GSMUA_Achr2P16860_001	Banana	endoplasmic reticulum, golgi	37.91	29.9
GSMUA_Achr5P04210_001	Banana	cytosol	23.53	21.3

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr1G04790_001	EnsemblPlants:GSMUA_Achr1P04790_001	EnsemblPlants:GSMUA_Achr1T04790_001	InterPro:IPR000608
InterPro:IPR016135	UniProt:M0RX37	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43902
PANTHER:PTHR43902:SF4	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI000294F7EC	:	:	:	:	:

Description

Ubiquitin-conjugating enzyme E2 35 [Source:GMGC_GENE;Acc:GSMUA_Achr1G04790_001]

Coordinates

chr1:-:3987042..3992538

Molecular Weight (calculated)

17192.7 Da

IEP (calculated)

7.508

GRAVY (calculated)

-0.319

Length

153 amino acids

Sequence
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EDNMRYFNVM ILGPSQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSDNIAKH WKTNEAEAVE TAKEWTRLYA SGA

Best Arabidopsis Sequence Match ( AT1G78870.2 )
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EDNMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVD TAKEWTRLYA SGA

Arabidopsis Description

UBC35UBC35 [Source:UniProtKB/TrEMBL;Acc:A0A178WFI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.