Factsheet for GSMUA_Achr9P28860_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 3
plastid 1
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g081950.2.1	Tomato	cytosol	96.4	89.92
GSMUA_Achr9P27870_001	Banana	cytosol	86.49	86.49
GSMUA_Achr1P16460_001	Banana	cytosol, nucleus, vacuole	67.57	83.33
GSMUA_Achr6P05720_001	Banana	cytosol	97.3	72.97
GSMUA_Achr10P...	Banana	cytosol	94.59	70.95
PGSC0003DMT400032059	Potato	cytosol	94.59	70.95
GSMUA_Achr9P05290_001	Banana	cytosol	94.59	70.95
GSMUA_Achr4P02490_001	Banana	cytosol	93.69	70.27
GSMUA_Achr7P24690_001	Banana	cytosol	93.69	70.27
GSMUA_Achr8P27940_001	Banana	cytosol	93.69	70.27
GSMUA_Achr3P15810_001	Banana	cytosol	92.79	69.59
GSMUA_Achr4P15590_001	Banana	cytosol	92.79	69.59
GSMUA_Achr9P12740_001	Banana	cytosol, nucleus, peroxisome	90.99	68.24
GSMUA_Achr6P36250_001	Banana	nucleus	90.09	67.57
GSMUA_Achr3P26650_001	Banana	cytosol, mitochondrion, peroxisome	88.29	66.22
GSMUA_Achr4P19400_001	Banana	cytosol	86.49	64.86
GSMUA_Achr9P12710_001	Banana	cytosol	86.49	64.86
GSMUA_Achr7P17820_001	Banana	cytosol	84.68	63.51
GSMUA_Achr4P10380_001	Banana	cytosol	94.59	61.4
GSMUA_Achr3P11950_001	Banana	cytosol	69.37	60.63
GSMUA_Achr4P08430_001	Banana	mitochondrion	94.59	58.99
GSMUA_Achr5P22400_001	Banana	cytosol, nucleus, peroxisome	90.09	47.62
GSMUA_Achr4P31060_001	Banana	cytosol, extracellular	35.14	47.56
GSMUA_Achr6P32020_001	Banana	mitochondrion, plastid	94.59	43.75
GSMUA_Achr4P22180_001	Banana	cytosol	50.45	40.29
GSMUA_Achr1P27440_001	Banana	cytosol	54.95	39.87
GSMUA_Achr1P04790_001	Banana	cytosol	54.95	39.87
GSMUA_Achr6P26870_001	Banana	cytosol	54.05	39.22
GSMUA_Achr6P00800_001	Banana	nucleus	45.95	35.66
GSMUA_Achr9P06450_001	Banana	cytosol	54.95	35.26
GSMUA_Achr6P04830_001	Banana	cytosol, nucleus, plastid	45.05	34.97
GSMUA_Achr2P17510_001	Banana	nucleus	45.05	34.48
GSMUA_Achr9P25840_001	Banana	mitochondrion, nucleus	45.05	32.89
GSMUA_Achr2P16860_001	Banana	endoplasmic reticulum, golgi	45.05	25.77
GSMUA_Achr5P04210_001	Banana	cytosol	36.94	24.26
GSMUA_Achr4P31050_001	Banana	cytosol	14.41	21.05

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr9G28860_001	EnsemblPlants:GSMUA_Achr9P28860_001	EnsemblPlants:GSMUA_Achr9T28860_001	InterPro:IPR000608
InterPro:IPR016135	UniProt:M0U4E3	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF55	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI000294A6FE	:	:	:	:	:

Description

Ubiquitin-conjugating enzyme E2-17 kDa [Source:GMGC_GENE;Acc:GSMUA_Achr9G28860_001]

Coordinates

chr9:-:32712268..32720067

Molecular Weight (calculated)

12475.0 Da

IEP (calculated)

8.207

GRAVY (calculated)

-0.325

Length

111 amino acids

Sequence
(BLAST)

001: MGPPDSPYAG GVFLITIHFP PDYPFKPPKV AFRTKVYHPN INSNGSICLD ILKEQWSPAL TISKVLLSIC SLLTDPNPDD PLVPEIAHIY KNDRNKYETT
101: ARSWTQKYAM G

Best Arabidopsis Sequence Match ( AT1G64230.4 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAVDNASKL LVLIELEDCC RRFSNCSCIL LLEKSQDIAM AHVLLCPVAE DMFHWQATIM GPSDSPYSGG VFLVTIHFPP
101: DYPFKPPKVA FRTKVFHPNV NSNGSICLDI LKEQWSPALT ISKVLLSICS LLTDPNPDDP LVPEIAHMYK TDRAKYESTA RSWTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.