CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012513_P001	Maize	mitochondrion	100.0	100.0
Zm00001d043070_P001	Maize	cytosol, nucleus, peroxisome	100.0	100.0
EES19701	Sorghum	cytosol	99.32	99.32
EES13053	Sorghum	cytosol	95.95	95.95
EER89829	Sorghum	cytosol	93.92	93.92
KXG33034	Sorghum	cytosol	91.22	91.84
EER98641	Sorghum	cytosol	89.86	89.86
KXG29317	Sorghum	nucleus	85.81	85.81
EES03421	Sorghum	cytosol	48.65	47.06
KXG35379	Sorghum	cytosol	48.65	47.06
GSMUA_Achr5P04210_001	Banana	cytosol	48.65	42.6
EER97436	Sorghum	plastid	53.38	42.25
KXG37384	Sorghum	mitochondrion, nucleus	43.24	42.11
EER98036	Sorghum	mitochondrion, nucleus	42.57	41.45
KXG31665	Sorghum	cytosol	41.89	34.83

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EntrezGene:8055304	UniProt:C5XN94	EnsemblPlants:EES01663	ProteinID:EES01663
ProteinID:EES01663.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR24068	PANTHER:PTHR24068:SF55	MetaCyc:PWY-7511	SMART:SM00212	EnsemblPlantsGene:SORBI_3003G337000	SUPFAM:SSF54495
unigene:Sbi.18075	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0000E64A16	RefSeq:XP_002456543.1

Description

hypothetical protein

Coordinates

chr3:+:66022976..66027384

Molecular Weight (calculated)

16487.9 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.364

Length

148 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPAGEDM FHWQATIMGP PDSPYAGGVF LVNIHFPPDY PFKPPKVSFK TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RPKYEATARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT3G08690.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPSN CSAGPVAEDM FHWQATIMGP PESPYAGGVF LVSIHFPPDY PFKPPKVSFK TKVYHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RSKYESTARS WTQKYAMG

Arabidopsis Description

UBC11Ubiquitin-conjugating enzyme E2 11 [Source:UniProtKB/Swiss-Prot;Acc:P35134]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.