CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0182500-02	Rice	mitochondrion, nucleus	98.68	98.68
KXG37384	Sorghum	mitochondrion, nucleus	98.68	98.68
KRH45858	Soybean	mitochondrion, nucleus	98.68	98.68
GSMUA_Achr6P04830_001	Banana	cytosol, nucleus, plastid	92.76	98.6
TraesCS2A01G247700.1	Wheat	nucleus	98.03	98.03
TraesCS1B01G140300.1	Wheat	mitochondrion	98.03	98.03
TraesCS1D01G121800.1	Wheat	mitochondrion, nucleus	97.37	97.37
Solyc03g113100.2.1	Tomato	mitochondrion, nucleus	96.71	96.71
PGSC0003DMT400046771	Potato	mitochondrion, nucleus	96.71	96.71
CDY11654	Canola	mitochondrion	96.05	96.05
CDY38761	Canola	mitochondrion	96.05	96.05
Bra016264.1-P	Field mustard	mitochondrion	96.05	96.05
KXG31665	Sorghum	cytosol	96.05	82.02
HORVU1Hr1G027600.1	Barley	plastid	98.03	63.14
EER89829	Sorghum	cytosol	42.11	43.24
KXG33034	Sorghum	cytosol	41.45	42.86
VIT_14s0108g00140.t01	Wine grape	cytosol, plastid	61.18	42.86
EES19701	Sorghum	cytosol	41.45	42.57
EES13053	Sorghum	cytosol	41.45	42.57
EES01663	Sorghum	cytosol, nucleus, peroxisome	41.45	42.57
KXG29317	Sorghum	nucleus	40.13	41.22
EER98641	Sorghum	cytosol	39.47	40.54
KXG35379	Sorghum	cytosol	38.16	37.91
EES03421	Sorghum	cytosol	37.5	37.25
EER97436	Sorghum	plastid	29.61	24.06

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	EntrezGene:8060700	UniProt:C5XAB9	EnsemblPlants:EER98036	ProteinID:EER98036
ProteinID:EER98036.1	GO:GO:0000166	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006511
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0016574	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	GO:GO:0043161	GO:GO:0061630
InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43898
PANTHER:PTHR43898:SF2	MetaCyc:PWY-7511	SMART:SM00212	EnsemblPlantsGene:SORBI_3002G045300	SUPFAM:SSF54495	unigene:Sbi.5173
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00001B3A0C	RefSeq:XP_002461515.1	:

Description

hypothetical protein

Coordinates

chr2:-:4275044..4282270

Molecular Weight (calculated)

17312.4 Da

IEP (calculated)

5.749

GRAVY (calculated)

-0.558

Length

152 amino acids

Sequence
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPHD NNIMLWNAVI FGPDDTPWDG GTFKLTLQFT EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARLF SENKREYNRK VREIVEQSWT AD

Best Arabidopsis Sequence Match ( AT2G02760.3 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SESKREYNRR VREVVEQSWT AD

Arabidopsis Description

UBC2UBC2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0U6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.