CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019981_P003	Maize	cytosol	99.32	99.32
Os09t0293400-01	Rice	cytosol	97.3	97.3
TraesCS5B01G174300.1	Wheat	cytosol	95.27	95.27
TraesCS5A01G177100.1	Wheat	cytosol	94.59	94.59
HORVU5Hr1G053810.1	Barley	cytosol	94.59	94.59
GSMUA_Achr1P16460_001	Banana	cytosol, nucleus, vacuole	57.43	94.44
EES01663	Sorghum	cytosol, nucleus, peroxisome	89.86	89.86
EES19701	Sorghum	cytosol	89.86	89.86
EES13053	Sorghum	cytosol	89.19	89.19
KXG33034	Sorghum	cytosol	87.16	87.76
EER89829	Sorghum	cytosol	87.16	87.16
KXG29317	Sorghum	nucleus	81.76	81.76
TraesCS5D01G181400.1	Wheat	cytosol, plastid	94.59	72.92
KXG35379	Sorghum	cytosol	50.0	48.37
EES03421	Sorghum	cytosol	49.32	47.71
EER97436	Sorghum	plastid	54.05	42.78
KXG37384	Sorghum	mitochondrion, nucleus	41.22	40.13
EER98036	Sorghum	mitochondrion, nucleus	40.54	39.47
KXG31665	Sorghum	cytosol	39.86	33.15

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EntrezGene:8063485	UniProt:C5X897	ncoils:Coil	EnsemblPlants:EER98641
ProteinID:EER98641	ProteinID:EER98641.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF55	MetaCyc:PWY-7511	SMART:SM00212	EnsemblPlantsGene:SORBI_3002G155500
SUPFAM:SSF54495	unigene:Sbi.8916	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00016FDF84
RefSeq:XP_002462120.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:47259420..47263241

Molecular Weight (calculated)

16665.9 Da

IEP (calculated)

6.941

GRAVY (calculated)

-0.482

Length

148 amino acids

Sequence
(BLAST)

001: MASKRIQKEL MDLQKDPPTS CSAGPAGEDL FHWQATIMGP SDSPYAGGVF FVNIHFPPDY PFKPPKVNFQ TKVYHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSISSLL TDPNPDDPLV PEIAHMYKNQ RQRYEETARA WTQKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.