Factsheet for TraesCS5D01G181400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G053810.1	Barley	cytosol	77.08	100.0
TraesCS5B01G174300.1	Wheat	cytosol	76.04	98.65
TraesCS5A01G177100.1	Wheat	cytosol	76.04	98.65
EER98641	Sorghum	cytosol	72.92	94.59
Zm00001d019981_P003	Maize	cytosol	72.4	93.92
Os09t0293400-01	Rice	cytosol	71.88	93.24
GSMUA_Achr1P16460_001	Banana	cytosol, nucleus, vacuole	41.67	88.89
TraesCS1D01G301300.1	Wheat	cytosol, nucleus, peroxisome	66.67	86.49
TraesCS3D01G336300.1	Wheat	cytosol, nucleus, peroxisome	66.15	85.81
TraesCS2D01G541400.1	Wheat	cytosol	65.62	85.14
TraesCS3D01G238700.1	Wheat	cytosol	64.58	84.35
TraesCS7D01G335800.1	Wheat	cytosol, nucleus, peroxisome	64.06	83.11
Zm00001d005532_P003	Maize	cytosol, mitochondrion	78.65	82.51
TraesCS6D01G069000.1	Wheat	cytosol	63.02	81.21
TraesCS4D01G067200.1	Wheat	plastid	45.31	77.68
TraesCS3D01G482300.1	Wheat	cytosol, extracellular, plastid	48.44	68.89
TraesCS1D01G082400.1	Wheat	cytosol, nucleus, peroxisome	48.44	65.03
TraesCS3D01G271400.1	Wheat	cytosol	37.5	47.06
TraesCS5D01G186100.1	Wheat	cytosol	36.46	45.75
TraesCS1D01G400600.1	Wheat	cytosol	36.46	45.75
TraesCS5D01G437100.1	Wheat	mitochondrion, nucleus	31.77	40.13
TraesCS1D01G121800.1	Wheat	mitochondrion, nucleus	31.25	39.47
TraesCS2D01G248000.1	Wheat	nucleus	31.25	39.47
TraesCS3D01G114600.3	Wheat	mitochondrion	30.73	36.42

Protein Annotations

EnsemblPlants:TraesCS5D01G181400.1	EnsemblPlantsGene:TraesCS5D01G181400	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	ncoils:Coil	PANTHER:PTHR24068	PANTHER:PTHR24068:SF55	PFAM:PF00179
PFscan:PS50127	ScanProsite:PS00183	SEG:seg	SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195
MapMan:19.2.2.5.2	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:281894356..281895489

Molecular Weight (calculated)

21440.8 Da

IEP (calculated)

8.595

GRAVY (calculated)

-0.195

Length

192 amino acids

Sequence
(BLAST)

001: MLSALHFKVH VSTCIGVPTI MFYLKKRTST LFAMFSSSYS VCSDMANKRI QKELMDLQKD PPTSCSAGPA GADLFHWQAT IMGPGDSPYS GGVFFVNIHF
101: PPDYPFKPPK VNFQTKVYHP NINSNGSICL DILKEQWSPA LTISKVLLSI SSLLTDPNPD DPLVPEIAQL YKNQRARYED TARAWTQKYA MG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.