Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G140300.1 | Wheat | mitochondrion | 99.34 | 99.34 |
| Os05t0182500-02 | Rice | mitochondrion, nucleus | 98.68 | 98.68 |
| EER98036 | Sorghum | mitochondrion, nucleus | 97.37 | 97.37 |
| KRH45858 | Soybean | mitochondrion, nucleus | 97.37 | 97.37 |
| TraesCS5D01G437100.1 | Wheat | mitochondrion, nucleus | 96.05 | 96.05 |
| GSMUA_Achr6P04830_001 | Banana | cytosol, nucleus, plastid | 90.13 | 95.8 |
| TraesCS2D01G248000.1 | Wheat | nucleus | 95.39 | 95.39 |
| Solyc03g113100.2.1 | Tomato | mitochondrion, nucleus | 95.39 | 95.39 |
| CDY11654 | Canola | mitochondrion | 94.74 | 94.74 |
| CDY38761 | Canola | mitochondrion | 94.74 | 94.74 |
| Bra016264.1-P | Field mustard | mitochondrion | 94.74 | 94.74 |
| TraesCS3D01G114600.3 | Wheat | mitochondrion | 94.74 | 88.89 |
| HORVU1Hr1G027600.1 | Barley | plastid | 99.34 | 63.98 |
| TraesCS3D01G238700.1 | Wheat | cytosol | 41.45 | 42.86 |
| TraesCS4D01G067200.1 | Wheat | plastid | 31.58 | 42.86 |
| TraesCS7D01G335800.1 | Wheat | cytosol, nucleus, peroxisome | 41.45 | 42.57 |
| TraesCS1D01G301300.1 | Wheat | cytosol, nucleus, peroxisome | 40.79 | 41.89 |
| TraesCS2D01G541400.1 | Wheat | cytosol | 40.79 | 41.89 |
| TraesCS3D01G336300.1 | Wheat | cytosol, nucleus, peroxisome | 40.79 | 41.89 |
| VIT_14s0108g00140.t01 | Wine grape | cytosol, plastid | 59.21 | 41.47 |
| TraesCS6D01G069000.1 | Wheat | cytosol | 40.13 | 40.94 |
| TraesCS5D01G186100.1 | Wheat | cytosol | 38.16 | 37.91 |
| TraesCS3D01G482300.1 | Wheat | cytosol, extracellular, plastid | 33.55 | 37.78 |
| TraesCS3D01G271400.1 | Wheat | cytosol | 37.5 | 37.25 |
| TraesCS1D01G082400.1 | Wheat | cytosol, nucleus, peroxisome | 34.87 | 37.06 |
| TraesCS1D01G400600.1 | Wheat | cytosol | 36.84 | 36.6 |
| TraesCS5D01G181400.1 | Wheat | cytosol, plastid | 39.47 | 31.25 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G121800.1 | EnsemblPlantsGene:TraesCS1D01G121800 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR43898 | PANTHER:PTHR43898:SF8 | PFAM:PF00179 | PFscan:PS50127 |
| ScanProsite:PS00183 | SMART:SM00212 | SUPFAM:SSF54495 | TIGR:cd00195 | MapMan:19.2.2.1.4 | : |
Description
No Description!
Coordinates
chr1D:+:121619108..121626510
Molecular Weight (calculated)
17322.5 Da
IEP (calculated)
5.196
GRAVY (calculated)
-0.543
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTPARKRLM RDFKRLMQDP PAGISGTPQD NNIMLWNAVI FGPDDTPWDG GTFKLTLQFT EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARLF SENKREYNRK VREVVEQSWT AD
101: DVAAILTSIQ SLLCDPNPNS PANSEAARLF SENKREYNRK VREVVEQSWT AD
001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD
Arabidopsis Description
UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.