Factsheet for Bra016264.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11654	Canola	mitochondrion	100.0	100.0
CDY38761	Canola	mitochondrion	100.0	100.0
Os07t0166800-02	Rice	mitochondrion, nucleus	96.05	96.05
EER98036	Sorghum	mitochondrion, nucleus	96.05	96.05
Os05t0182500-02	Rice	mitochondrion, nucleus	96.05	96.05
KRH45858	Soybean	mitochondrion, nucleus	96.05	96.05
TraesCS1B01G140300.1	Wheat	mitochondrion	95.39	95.39
Solyc03g113100.2.1	Tomato	mitochondrion, nucleus	95.39	95.39
Os03t0791800-01	Rice	mitochondrion, nucleus	95.39	95.39
TraesCS1D01G121800.1	Wheat	mitochondrion, nucleus	94.74	94.74
GSMUA_Achr6P04830_001	Banana	cytosol, nucleus, plastid	88.82	94.41
TraesCS2A01G247700.1	Wheat	nucleus	94.08	94.08
Bra026833.1-P	Field mustard	mitochondrion, nucleus	94.08	94.08
Bra026582.1-P	Field mustard	mitochondrion, nucleus	94.08	94.08
Bra024808.1-P	Field mustard	mitochondrion, nucleus	94.08	94.08
Bra017410.1-P	Field mustard	mitochondrion, nucleus	94.08	94.08
Bra026222.1-P	Field mustard	mitochondrion, nucleus	93.42	93.42
PGSC0003DMT400046771	Potato	mitochondrion, nucleus	93.42	93.42
Bra029252.1-P	Field mustard	mitochondrion, nucleus	88.16	89.33
Bra016704.1-P	Field mustard	nucleus	84.21	84.21
Bra016703.1-P	Field mustard	nucleus	94.08	68.1
Zm00001d018884_P002	Maize	mitochondrion	96.71	66.22
HORVU1Hr1G027600.1	Barley	plastid	95.39	61.44
Bra027688.1-P	Field mustard	cytosol	32.89	45.05
Bra029076.1-P	Field mustard	cytosol	42.11	43.24
Bra003066.1-P	Field mustard	cytosol	42.11	43.24
Bra022645.1-P	Field mustard	cytosol	42.11	43.24
Bra001347.1-P	Field mustard	cytosol	41.45	42.57
Bra035605.1-P	Field mustard	cytosol	41.45	42.57
Bra041101.1-P	Field mustard	cytosol	41.45	42.57
Bra028946.1-P	Field mustard	cytosol	38.82	42.14
Bra013049.1-P	Field mustard	cytosol	40.13	41.22
VIT_14s0108g00140.t01	Wine grape	cytosol, plastid	58.55	41.01
Bra002842.1-P	Field mustard	cytosol	39.47	40.54
Bra027749.1-P	Field mustard	nucleus	37.5	37.5
Bra032244.1-P	Field mustard	cytosol	36.84	37.33
Bra026700.1-P	Field mustard	cytosol	37.5	37.25
Bra026018.1-P	Field mustard	cytosol	37.5	37.25
Bra016626.1-P	Field mustard	cytosol	36.84	36.6
Bra008383.1-P	Field mustard	cytosol	36.84	36.6
Bra035071.1-P	Field mustard	cytosol	32.24	35.25
Bra001995.1-P	Field mustard	cytosol	40.13	33.89
Bra027422.1-P	Field mustard	plastid	33.55	27.87
Bra029711.1-P	Field mustard	nucleus	41.45	20.32

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra016264	EnsemblPlants:Bra016264.1	EnsemblPlants:Bra016264.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4DID7	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43898
PANTHER:PTHR43898:SF2	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI00025418B0	:	:	:	:	:

Description

AT1G14400 (E=5e-085) UBC1, ATUBC1 | UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase

Coordinates

chrA07:-:18560857..18561683

Molecular Weight (calculated)

17299.4 Da

IEP (calculated)

5.184

GRAVY (calculated)

-0.551

Length

152 amino acids

Sequence
(BLAST)

001: MSTPARKRLM RDFRRLQQDP PAGISGAPQD NNILLWNAVI FGPDDTPWDG GTFKLTLQFT EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARLF SENKREYNRR VKDIVEQSWT AD

Best Arabidopsis Sequence Match ( AT1G14400.1 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD

Arabidopsis Description

UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.