Factsheet for Bra029076.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47067	Canola	cytosol	100.0	100.0
CDX96210	Canola	cytosol	100.0	100.0
Bra022645.1-P	Field mustard	cytosol	100.0	100.0
Bra003066.1-P	Field mustard	cytosol	99.32	99.32
AT5G53300.1	Thale cress	cytosol, nucleus, peroxisome	98.65	98.65
Solyc08g008220.2.1	Tomato	cytosol	97.3	97.3
Solyc05g050230.2.1	Tomato	cytosol	97.3	97.3
PGSC0003DMT400084207	Potato	cytosol	97.3	97.3
PGSC0003DMT400014816	Potato	cytosol	97.3	97.3
Bra027688.1-P	Field mustard	cytosol	71.62	95.5
Bra001347.1-P	Field mustard	cytosol	93.92	93.92
Bra041101.1-P	Field mustard	cytosol	93.92	93.92
Bra035605.1-P	Field mustard	cytosol	89.86	89.86
Bra028946.1-P	Field mustard	cytosol	83.11	87.86
Bra002842.1-P	Field mustard	cytosol	86.49	86.49
Bra027749.1-P	Field mustard	nucleus	85.14	82.89
CDY54342	Canola	cytosol	100.0	80.43
Bra013049.1-P	Field mustard	cytosol	80.41	80.41
Bra001995.1-P	Field mustard	cytosol	81.76	67.22
Bra032244.1-P	Field mustard	cytosol	52.03	51.33
Bra026018.1-P	Field mustard	cytosol	49.32	47.71
Bra026700.1-P	Field mustard	cytosol	48.65	47.06
Bra016626.1-P	Field mustard	cytosol	48.65	47.06
Bra008383.1-P	Field mustard	cytosol	47.97	46.41
Bra035071.1-P	Field mustard	cytosol	42.57	45.32
Bra029252.1-P	Field mustard	mitochondrion, nucleus	45.27	44.67
Bra029711.1-P	Field mustard	nucleus	91.89	43.87
Bra017410.1-P	Field mustard	mitochondrion, nucleus	44.59	43.42
Bra026833.1-P	Field mustard	mitochondrion, nucleus	44.59	43.42
Bra026222.1-P	Field mustard	mitochondrion, nucleus	44.59	43.42
Bra026582.1-P	Field mustard	mitochondrion, nucleus	43.92	42.76
Bra024808.1-P	Field mustard	mitochondrion, nucleus	43.92	42.76
Bra016264.1-P	Field mustard	mitochondrion	43.24	42.11
Bra016704.1-P	Field mustard	nucleus	41.22	40.13
Bra027422.1-P	Field mustard	plastid	45.95	37.16
Bra016703.1-P	Field mustard	nucleus	44.59	31.43

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra029076	EnsemblPlants:Bra029076.1	EnsemblPlants:Bra029076.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4EJW0	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF68	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0001730BBC	:	:	:	:	:

Description

AT5G53300 (E=3e-085) UBC10 | UBC10 (ubiquitin-conjugating enzyme 10); ubiquitin-protein ligase

Coordinates

chrA03:+:6225229..6226210

Molecular Weight (calculated)

16537.9 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.321

Length

148 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP TDSPYAGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT5G53300.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SESPYAGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTARS WTQKYAMG

Arabidopsis Description

UBC10Ubiquitin-conjugating enzyme E2 10 [Source:UniProtKB/Swiss-Prot;Acc:P35133]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.