CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029076.1-P	Field mustard	cytosol	100.0	100.0
CDY49174	Canola	cytosol	100.0	100.0
CDY47067	Canola	cytosol	100.0	100.0
CDY35636	Canola	cytosol	99.32	99.32
CDY14388	Canola	cytosol	99.32	99.32
AT5G53300.1	Thale cress	cytosol, nucleus, peroxisome	98.65	98.65
Solyc08g008220.2.1	Tomato	cytosol	97.3	97.3
Solyc05g050230.2.1	Tomato	cytosol	97.3	97.3
PGSC0003DMT400084207	Potato	cytosol	97.3	97.3
PGSC0003DMT400014816	Potato	cytosol	97.3	97.3
CDY34409	Canola	cytosol	95.27	95.27
CDY25571	Canola	cytosol	95.27	95.27
CDY51965	Canola	cytosol	86.49	86.49
CDY17396	Canola	cytosol	86.49	86.49
CDX76970	Canola	cytosol	85.81	85.81
CDX71304	Canola	cytosol, mitochondrion, nucleus	83.78	83.78
CDY68877	Canola	cytosol, mitochondrion	89.86	83.12
CDY06521	Canola	cytosol, plastid	89.86	83.12
CDY31408	Canola	cytosol	83.11	83.11
CDY54342	Canola	cytosol	100.0	80.43
CDY02238	Canola	cytosol	80.41	80.41
CDX89747	Canola	cytosol	79.73	79.73
CDY08368	Canola	cytosol	84.46	78.62
CDY11958	Canola	cytosol	90.54	77.46
CDY38184	Canola	cytosol	85.81	70.56
CDY39254	Canola	cytosol	54.73	69.83
CDY36778	Canola	cytosol	89.86	61.29
CDY23674	Canola	cytosol	44.59	59.46
CDX73346	Canola	cytosol	44.59	59.46
CDY37098	Canola	cytosol	43.92	58.56
CDY06520	Canola	cytosol	56.76	54.19
CDY40025	Canola	cytosol	50.0	48.37
CDX81788	Canola	cytosol	49.32	47.71
CDY35126	Canola	cytosol	49.32	47.71
CDY65274	Canola	cytosol	46.62	47.26
CDX83936	Canola	cytosol	48.65	47.06
CDY54372	Canola	cytosol	48.65	47.06
CDX96802	Canola	cytosol	48.65	47.06
CDX87428	Canola	cytosol	47.97	46.41
CDX88485	Canola	cytosol	47.97	46.41
CDY14587	Canola	cytosol	47.97	46.1
CDY26882	Canola	cytosol	44.59	45.52
CDY30726	Canola	mitochondrion, nucleus	45.27	44.67
CDY66232	Canola	mitochondrion, nucleus	45.27	44.67
CDY57941	Canola	cytosol	46.62	44.52
CDY11654	Canola	mitochondrion	43.24	42.11
CDY39315	Canola	mitochondrion	43.24	42.11
CDY38761	Canola	mitochondrion	43.24	42.11
CDX79272	Canola	cytosol	46.62	40.59
CDY03040	Canola	mitochondrion, nucleus	38.51	40.43
CDX84034	Canola	nucleus	27.03	37.38
CDY23617	Canola	plastid	45.95	37.16
CDY59253	Canola	mitochondrion	45.95	37.16
CDY68969	Canola	mitochondrion	35.14	35.86
CDX73344	Canola	cytosol	37.16	33.54
CDX96859	Canola	mitochondrion	41.22	32.28

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	GO:B2LWX9	UniProt:B2LWX9	EnsemblPlants:CDX96210	ProteinID:CDX96210
ProteinID:CDX96210.1	ProteinID:CDY47067.1	ProteinID:CDY49174.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00102303001	InterPro:IPR000608	InterPro:IPR016135
PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF68	MetaCyc:PWY-7511
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143
UniParc:UPI0001730BBC	:	:	:	:	:

Description

BnaC02g14410DBnaA02g10330D protein [Source:UniProtKB/TrEMBL;Acc:B2LWX9]

Coordinates

chrLK031893:-:702718..704252

Molecular Weight (calculated)

16537.9 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.321

Length

148 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP TDSPYAGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT5G53300.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SESPYAGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTARS WTQKYAMG

Arabidopsis Description

UBC10Ubiquitin-conjugating enzyme E2 10 [Source:UniProtKB/Swiss-Prot;Acc:P35133]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.